Result of FASTA (ccds) for
pF1KSDA0785
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0785, 694 aa
1>>>pF1KSDA0785 694 - 694 aa - 694 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8147+/-0.000978; mu= 17.5449+/- 0.059
mean_var=74.4144+/-14.407, 0's: 0 Z-trim(105.4): 17 B-trim: 5 in 1/50
Lambda= 0.148678
statistics sampled from 8416 (8425) to 8416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.259), width: 16
Scan time: 3.420
The best scores are: opt bits E(32554)
CCDS14118.1 ZBED1 gene_id:9189|Hs108|chrX ( 694) 4609 998.4 0
CCDS14118.1 ZBED1 gene_id:9189|Hs108|chrY ( 694) 4609 998.4 0
CCDS33677.1 ZBED4 gene_id:9889|Hs108|chr22 (1171) 503 117.7 9.6e-26
>>CCDS14118.1 ZBED1 gene_id:9189|Hs108|chrX (694 aa)
initn: 4609 init1: 4609 opt: 4609 Z-score: 5339.0 bits: 998.4 E(32554): 0
Smith-Waterman score: 4609; 100.0% identity (100.0% similar) in 694 aa overlap (1-694:1-694)
10 20 30 40 50 60
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
610 620 630 640 650 660
670 680 690
pF1KSD DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
::::::::::::::::::::::::::::::::::
CCDS14 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
670 680 690
>>CCDS14118.1 ZBED1 gene_id:9189|Hs108|chrY (694 aa)
initn: 4609 init1: 4609 opt: 4609 Z-score: 5339.0 bits: 998.4 E(32554): 0
Smith-Waterman score: 4609; 100.0% identity (100.0% similar) in 694 aa overlap (1-694:1-694)
10 20 30 40 50 60
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
610 620 630 640 650 660
670 680 690
pF1KSD DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
::::::::::::::::::::::::::::::::::
CCDS14 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
670 680 690
>>CCDS33677.1 ZBED4 gene_id:9889|Hs108|chr22 (1171 aa)
initn: 402 init1: 136 opt: 503 Z-score: 575.7 bits: 117.7 E(32554): 9.6e-26
Smith-Waterman score: 556; 25.0% identity (56.6% similar) in 647 aa overlap (20-650:558-1163)
10 20 30 40
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRI
. ::.:..:.. : . :. :
CCDS33 LASAESSSSKLTDLPTVVTKNNQVMFPVNSKKTSKLWNHFSI------CSADSTKVVCLH
530 540 550 560 570 580
50 60 70 80 90 100
pF1KSD CMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDA
: :. . . .::. : ..: : . :: . : .. . :.... : ..
CCDS33 CGRTISRGKKPTNLGTSCLLRHLQRFHSNVLK-TEVSETARPSSPDTRVPRGTELSGASS
590 600 610 620 630 640
110 120 130 140 150 160
pF1KSD LAVKAGHGYDSKK-QQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYI
. . :::. ...:. . .: : : :.::. :. ::. :.: ::. .:.
CCDS33 FDDTNEKFYDSHPVAKKITSLIAEMIALDLQPYSFVDNVGFNRLLEYLKPQYSLPAPSYF
650 660 670 680 690 700
170 180 190 200 210 220
pF1KSD STKAIPEKYGAVREVILKELAEATWCGI---STDMWRSENQNRAYVTLAAHFLGLGAPN-
: ::: : :...:...: :: :. .. .: : ::.: :.::.::.... .:
CCDS33 SRTAIPGMYDNVKQIIMSHLKEAE-SGVIHFTSGIWMS-NQTREYLTLTAHWVSFESPAR
710 720 730 740 750
230 240 250 260 270 280
pF1KSD --CLSMG-SRCLKTFEVPEENTAETITRVLYEVFIEWGISAKV-FGATTNYGKDIVKACS
: . : : . .: . ....: . : . : :. . : :.. . .: :.
CCDS33 PRCDDHHCSALLDVSQVDCDYSGNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKT--
760 770 780 790 800 810
290 300 310 320 330
pF1KSD LLDVAVH--MPCLGHTFNAGIQQAFQLPKL-GALLSRCRKLVEYFQQSAVAMYMLYEKQK
:. . : . :..:: : ...:.. .. ::: ::. : ..: : : : :.
CCDS33 -LNEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAELQR
820 830 840 850 860 870
340 350 360 370 380 390
pF1KSD QQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGL
. . . :... : :.... ::.:: ::. .: . :: : . .. ..: .....
CCDS33 EYALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVE--CNFRELISCDQWEVMQSV
880 890 900 910 920 930
400 410 420 430 440 450
pF1KSD VELLQPFKQVAEMLSASRYPTISMVKPLLHML-LNTTLNIKET---DSKELSMAKEVIAK
. :.::. ... .: ... :.:.: :..:.: .. . ..:: :. :. ::....
CCDS33 CRALKPFEAASREMS-TQMSTLSQVIPMVHILNRKVEMLFEETMGIDTMLRSL-KEAMVS
940 950 960 970 980 990
460 470 480 490 500 510
pF1KSD ELSKTYQETPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDGGY
.:: : .. :. .: ::.:::::: ... : .: .. ...: . :.....
CCDS33 RLSATLHD-PRY-VF---ATLLDPRYKA-SLFTEEEAEQYKQDLIRELE-LMNSTS----
1000 1010 1020 1030 1040
520 530 540 550 560 570
pF1KSD RPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEEWHAQVVEELS
:. ... ...: :. .. : . .. . .:. .:
CCDS33 -----------EDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKLPEAMVLA--
1050 1060 1070 1080
580 590 600 610 620 630
pF1KSD NFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRVAPERLFGSAANVVSAKR
. ..:: . ::: .:. . : .: : . .. . : :.::.. .. : .
CCDS33 -YLEEEVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTENGSLGQ
1090 1100 1110 1120 1130 1140
640 650 660 670 680 690
pF1KSD NRLAPAHVDEQVFLYENARSGAEAEPEDQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSF
.:: : .. .:: :
CCDS33 SRLMMEHFEKLIFLKVNLPLIYFQY
1150 1160 1170
694 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:09:49 2016 done: Thu Nov 3 03:09:49 2016
Total Scan time: 3.420 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]