FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0776, 794 aa
  1>>>pF1KSDA0776 794 - 794 aa - 794 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3889+/-0.00118; mu= 15.7216+/- 0.071
 mean_var=95.6502+/-18.404, 0's: 0 Z-trim(104.3): 27  B-trim: 164 in 1/49
 Lambda= 0.131139
 statistics sampled from 7814 (7819) to 7814 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.58), E-opt: 0.2 (0.24), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(32554)
CCDS5034.1 UFL1 gene_id:23376|Hs108|chr6           ( 794) 5029 962.6       0


>>CCDS5034.1 UFL1 gene_id:23376|Hs108|chr6                (794 aa)
 initn: 5029 init1: 5029 opt: 5029  Z-score: 5143.5  bits: 962.6 E(32554):    0
Smith-Waterman score: 5029; 100.0% identity (100.0% similar) in 794 aa overlap (1-794:1-794)

               10        20        30        40        50        60
pF1KSD MADAWEEIRRLAADFQRAQFAEATQRLSERNCIEIVNKLIAQKQLEVVHTLDGKEYITPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MADAWEEIRRLAADFQRAQFAEATQRLSERNCIEIVNKLIAQKQLEVVHTLDGKEYITPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QISKEMRDELHVRGGRVNIVDLQQVINVDLIHIENRIGDIIKSEKHVQLVLGQLIDENYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 QISKEMRDELHVRGGRVNIVDLQQVINVDLIHIENRIGDIIKSEKHVQLVLGQLIDENYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DRLAEEVNDKLQESGQVTISELCKTYDLPGNFLTQALTQRLGRIISGHIDLDNRGVIFTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 DRLAEEVNDKLQESGQVTISELCKTYDLPGNFLTQALTQRLGRIISGHIDLDNRGVIFTE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD AFVARHKARIRGLFSAITRPTAVNSLISKYGFQEQLLYSVLEELVNSGRLRGTVVGGRQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 AFVARHKARIRGLFSAITRPTAVNSLISKYGFQEQLLYSVLEELVNSGRLRGTVVGGRQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KAVFVPDIYSRTQSTWVDSFFRQNGYLEFDALSRLGIPDAVSYIKKRYKTTQLLFLKAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 KAVFVPDIYSRTQSTWVDSFFRQNGYLEFDALSRLGIPDAVSYIKKRYKTTQLLFLKAAC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VGQGLVDQVEASVEEAISSGTWVDIAPLLPTSLSVEDAAILLQQVMRAFSKQASTVVFSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 VGQGLVDQVEASVEEAISSGTWVDIAPLLPTSLSVEDAAILLQQVMRAFSKQASTVVFSD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD TVVVSEKFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 TVVVSEKFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 RRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD EIEDFLRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 EIEDFLRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD QEEVSNLYNNIRLFEKGMKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 QEEVSNLYNNIRLFEKGMKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AAITSEIRKKILSKLSEETKVALTKLHNSLNEKSIEDFISCLDSAAEACDIMVKRGDKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 AAITSEIRKKILSKLSEETKVALTKLHNSLNEKSIEDFISCLDSAAEACDIMVKRGDKKR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD ERQILFQHRQALAEQLKVTEDPALILHLTSVLLFQFSTHSMLHAPGRCVPQIIAFLNSKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 ERQILFQHRQALAEQLKVTEDPALILHLTSVLLFQFSTHSMLHAPGRCVPQIIAFLNSKI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD PEDQHALLVKYQGLVVKQLVSQSKKTGQGDYPLNNELDKEQEDVASTTRKELQELSSSIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 PEDQHALLVKYQGLVVKQLVSQSKKTGQGDYPLNNELDKEQEDVASTTRKELQELSSSIK
              730       740       750       760       770       780

              790    
pF1KSD DLVLKSRKSSVTEE
       ::::::::::::::
CCDS50 DLVLKSRKSSVTEE
              790    




794 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:03:59 2016 done: Thu Nov  3 03:03:59 2016
 Total Scan time:  3.070 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]