Result of FASTA (ccds) for
pF1KSDA0770
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0770, 875 aa
1>>>pF1KSDA0770 875 - 875 aa - 875 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8389+/-0.00116; mu= 18.1352+/- 0.070
mean_var=73.7857+/-14.522, 0's: 0 Z-trim(102.3): 32 B-trim: 0 in 0/47
Lambda= 0.149310
statistics sampled from 6864 (6870) to 6864 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.569), E-opt: 0.2 (0.211), width: 16
Scan time: 3.680
The best scores are: opt bits E(32554)
CCDS10083.1 VPS39 gene_id:23339|Hs108|chr15 ( 875) 5841 1268.4 0
CCDS73710.1 VPS39 gene_id:23339|Hs108|chr15 ( 886) 5512 1197.5 0
>>CCDS10083.1 VPS39 gene_id:23339|Hs108|chr15 (875 aa)
initn: 5841 init1: 5841 opt: 5841 Z-score: 6794.8 bits: 1268.4 E(32554): 0
Smith-Waterman score: 5841; 100.0% identity (100.0% similar) in 875 aa overlap (1-875:1-875)
10 20 30 40 50 60
pF1KSD MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLAIPYLEHIIHVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLAIPYLEHIIHVW
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRQKLLMFLEIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRQKLLMFLEIS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDRNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDRNK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD DGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHSKLDTTKALNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHSKLDTTKALNLL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
790 800 810 820 830 840
850 860 870
pF1KSD CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
:::::::::::::::::::::::::::::::::::
CCDS10 CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
850 860 870
>>CCDS73710.1 VPS39 gene_id:23339|Hs108|chr15 (886 aa)
initn: 5819 init1: 5512 opt: 5512 Z-score: 6411.8 bits: 1197.5 E(32554): 0
Smith-Waterman score: 5801; 98.6% identity (98.8% similar) in 886 aa overlap (1-875:1-886)
10 20 30 40
pF1KSD MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDV-----------GCN
:::::::::::::::::::::::::::::::::::::::::::::: .::
CCDS73 MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KSD RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KSD FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KSD LNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASN
250 260 270 280 290 300
290 300 310 320 330 340
pF1KSD HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQK
310 320 330 340 350 360
350 360 370 380 390 400
pF1KSD RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL
370 380 390 400 410 420
410 420 430 440 450 460
pF1KSD TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
430 440 450 460 470 480
470 480 490 500 510 520
pF1KSD RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
490 500 510 520 530 540
530 540 550 560 570 580
pF1KSD QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLA
550 560 570 580 590 600
590 600 610 620 630 640
pF1KSD IPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEY
610 620 630 640 650 660
650 660 670 680 690 700
pF1KSD RQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAE
670 680 690 700 710 720
710 720 730 740 750 760
pF1KSD EYCHKHYDRNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EYCHKHYDRNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHS
730 740 750 760 770 780
770 780 790 800 810 820
pF1KSD KLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
790 800 810 820 830 840
830 840 850 860 870
pF1KSD QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
850 860 870 880
875 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:02:47 2016 done: Thu Nov 3 03:02:48 2016
Total Scan time: 3.680 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]