Result of FASTA (omim) for
pF1KSDA0764
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0764, 414 aa
1>>>pF1KSDA0764 414 - 414 aa - 414 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0381+/-0.000303; mu= 10.6148+/- 0.019
mean_var=117.3888+/-23.421, 0's: 0 Z-trim(119.8): 12 B-trim: 0 in 0/54
Lambda= 0.118375
statistics sampled from 34259 (34271) to 34259 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.402), width: 16
Scan time: 8.700
The best scores are: opt bits E(85289)
NP_055675 (OMIM: 612762) STAGA complex 65 subunit ( 414) 2802 489.0 9.1e-138
NP_001269658 (OMIM: 612762) STAGA complex 65 subun ( 414) 2802 489.0 9.1e-138
NP_001269660 (OMIM: 612762) STAGA complex 65 subun ( 412) 2777 484.7 1.8e-136
XP_005264729 (OMIM: 612762) PREDICTED: STAGA compl ( 412) 2777 484.7 1.8e-136
NP_001269659 (OMIM: 612762) STAGA complex 65 subun ( 412) 2777 484.7 1.8e-136
NP_001269661 (OMIM: 612762) STAGA complex 65 subun ( 279) 1820 321.2 2e-87
>>NP_055675 (OMIM: 612762) STAGA complex 65 subunit gamm (414 aa)
initn: 2802 init1: 2802 opt: 2802 Z-score: 2594.3 bits: 489.0 E(85289): 9.1e-138
Smith-Waterman score: 2802; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KSD MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
310 320 330 340 350 360
370 380 390 400 410
pF1KSD GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
370 380 390 400 410
>>NP_001269658 (OMIM: 612762) STAGA complex 65 subunit g (414 aa)
initn: 2802 init1: 2802 opt: 2802 Z-score: 2594.3 bits: 489.0 E(85289): 9.1e-138
Smith-Waterman score: 2802; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KSD MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
310 320 330 340 350 360
370 380 390 400 410
pF1KSD GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
370 380 390 400 410
>>NP_001269660 (OMIM: 612762) STAGA complex 65 subunit g (412 aa)
initn: 2777 init1: 2777 opt: 2777 Z-score: 2571.3 bits: 484.7 E(85289): 1.8e-136
Smith-Waterman score: 2777; 99.5% identity (99.8% similar) in 412 aa overlap (3-414:1-412)
10 20 30 40 50 60
pF1KSD MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
. ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
10 20 30 40 50
70 80 90 100 110 120
pF1KSD SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
240 250 260 270 280 290
310 320 330 340 350 360
pF1KSD SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
300 310 320 330 340 350
370 380 390 400 410
pF1KSD GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
360 370 380 390 400 410
>>XP_005264729 (OMIM: 612762) PREDICTED: STAGA complex 6 (412 aa)
initn: 2777 init1: 2777 opt: 2777 Z-score: 2571.3 bits: 484.7 E(85289): 1.8e-136
Smith-Waterman score: 2777; 99.5% identity (99.8% similar) in 412 aa overlap (3-414:1-412)
10 20 30 40 50 60
pF1KSD MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
. ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
10 20 30 40 50
70 80 90 100 110 120
pF1KSD SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
240 250 260 270 280 290
310 320 330 340 350 360
pF1KSD SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
300 310 320 330 340 350
370 380 390 400 410
pF1KSD GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
360 370 380 390 400 410
>>NP_001269659 (OMIM: 612762) STAGA complex 65 subunit g (412 aa)
initn: 2777 init1: 2777 opt: 2777 Z-score: 2571.3 bits: 484.7 E(85289): 1.8e-136
Smith-Waterman score: 2777; 99.5% identity (99.8% similar) in 412 aa overlap (3-414:1-412)
10 20 30 40 50 60
pF1KSD MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
. ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
10 20 30 40 50
70 80 90 100 110 120
pF1KSD SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
240 250 260 270 280 290
310 320 330 340 350 360
pF1KSD SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
300 310 320 330 340 350
370 380 390 400 410
pF1KSD GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
360 370 380 390 400 410
>>NP_001269661 (OMIM: 612762) STAGA complex 65 subunit g (279 aa)
initn: 1820 init1: 1820 opt: 1820 Z-score: 1690.5 bits: 321.2 E(85289): 2e-87
Smith-Waterman score: 1820; 98.6% identity (99.3% similar) in 278 aa overlap (137-414:2-279)
110 120 130 140 150 160
pF1KSD GSPPLPDDLLPLDCKNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATIL
.. ::::::::::::::::::::::::::
NP_001 MNLQSGKGEPVTELSWHSCRQLLYQAVATIL
10 20 30
170 180 190 200 210 220
pF1KSD AHAGFDCANESVLETLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHAGFDCANESVLETLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIG
40 50 60 70 80 90
230 240 250 260 270 280
pF1KSD SVLSLQKFWQHRIKDYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVLSLQKFWQHRIKDYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFP
100 110 120 130 140 150
290 300 310 320 330 340
pF1KSD VSEELEADLASGDQSLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSEELEADLASGDQSLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEP
160 170 180 190 200 210
350 360 370 380 390 400
pF1KSD QESEEGNVSGHGVLGSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QESEEGNVSGHGVLGSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQR
220 230 240 250 260 270
410
pF1KSD CKKRMRKI
::::::::
NP_001 CKKRMRKI
414 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:01:20 2016 done: Thu Nov 3 03:01:22 2016
Total Scan time: 8.700 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]