FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0764, 414 aa
  1>>>pF1KSDA0764 414 - 414 aa - 414 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3251+/-0.000749; mu= 8.6134+/- 0.046
 mean_var=107.9465+/-21.378, 0's: 0 Z-trim(112.3): 7  B-trim: 55 in 2/50
 Lambda= 0.123444
 statistics sampled from 13057 (13063) to 13057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.401), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS42667.1 SUPT7L gene_id:9913|Hs108|chr2         ( 414) 2802 509.2  3e-144
CCDS62885.1 SUPT7L gene_id:9913|Hs108|chr2         ( 412) 2777 504.7 6.5e-143
CCDS62886.1 SUPT7L gene_id:9913|Hs108|chr2         ( 279) 1820 334.2 9.3e-92


>>CCDS42667.1 SUPT7L gene_id:9913|Hs108|chr2              (414 aa)
 initn: 2802 init1: 2802 opt: 2802  Z-score: 2703.2  bits: 509.2 E(32554): 3e-144
Smith-Waterman score: 2802; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KSD MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KSD GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
              370       380       390       400       410    

>>CCDS62885.1 SUPT7L gene_id:9913|Hs108|chr2              (412 aa)
 initn: 2777 init1: 2777 opt: 2777  Z-score: 2679.2  bits: 504.7 E(32554): 6.5e-143
Smith-Waterman score: 2777; 99.5% identity (99.8% similar) in 412 aa overlap (3-414:1-412)

               10        20        30        40        50        60
pF1KSD MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
         . ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62   MLRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KSD SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KSD KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KSD TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
      180       190       200       210       220       230        

              250       260       270       280       290       300
pF1KSD DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
      240       250       260       270       280       290        

              310       320       330       340       350       360
pF1KSD SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
      300       310       320       330       340       350        

              370       380       390       400       410    
pF1KSD GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
      360       370       380       390       400       410  

>>CCDS62886.1 SUPT7L gene_id:9913|Hs108|chr2              (279 aa)
 initn: 1820 init1: 1820 opt: 1820  Z-score: 1760.9  bits: 334.2 E(32554): 9.3e-92
Smith-Waterman score: 1820; 98.6% identity (99.3% similar) in 278 aa overlap (137-414:2-279)

        110       120       130       140       150       160      
pF1KSD GSPPLPDDLLPLDCKNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATIL
                                     ..  ::::::::::::::::::::::::::
CCDS62                              MNLQSGKGEPVTELSWHSCRQLLYQAVATIL
                                            10        20        30 

        170       180       190       200       210       220      
pF1KSD AHAGFDCANESVLETLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 AHAGFDCANESVLETLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIG
              40        50        60        70        80        90 

        230       240       250       260       270       280      
pF1KSD SVLSLQKFWQHRIKDYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SVLSLQKFWQHRIKDYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFP
             100       110       120       130       140       150 

        290       300       310       320       330       340      
pF1KSD VSEELEADLASGDQSLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 VSEELEADLASGDQSLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEP
             160       170       180       190       200       210 

        350       360       370       380       390       400      
pF1KSD QESEEGNVSGHGVLGSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QESEEGNVSGHGVLGSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQR
             220       230       240       250       260       270 

        410    
pF1KSD CKKRMRKI
       ::::::::
CCDS62 CKKRMRKI
               




414 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:01:20 2016 done: Thu Nov  3 03:01:20 2016
 Total Scan time:  2.800 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]