Result of FASTA (omim) for
pF1KSDA0757
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0757, 520 aa
1>>>pF1KSDA0757 520 - 520 aa - 520 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5205+/-0.000364; mu= 9.0758+/- 0.023
mean_var=147.5594+/-30.165, 0's: 0 Z-trim(118.9): 35 B-trim: 0 in 0/51
Lambda= 0.105582
statistics sampled from 32308 (32342) to 32308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.379), width: 16
Scan time: 10.850
The best scores are: opt bits E(85289)
NP_001129245 (OMIM: 607662) spermatogenesis-associ ( 520) 3489 543.2 7e-154
NP_006029 (OMIM: 607662) spermatogenesis-associate ( 520) 3489 543.2 7e-154
XP_006723957 (OMIM: 607662) PREDICTED: spermatogen ( 520) 3489 543.2 7e-154
XP_011527418 (OMIM: 607662) PREDICTED: spermatogen ( 520) 3489 543.2 7e-154
>>NP_001129245 (OMIM: 607662) spermatogenesis-associated (520 aa)
initn: 3489 init1: 3489 opt: 3489 Z-score: 2883.6 bits: 543.2 E(85289): 7e-154
Smith-Waterman score: 3489; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)
10 20 30 40 50 60
pF1KSD MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
430 440 450 460 470 480
490 500 510 520
pF1KSD DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
::::::::::::::::::::::::::::::::::::::::
NP_001 DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
490 500 510 520
>>NP_006029 (OMIM: 607662) spermatogenesis-associated pr (520 aa)
initn: 3489 init1: 3489 opt: 3489 Z-score: 2883.6 bits: 543.2 E(85289): 7e-154
Smith-Waterman score: 3489; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)
10 20 30 40 50 60
pF1KSD MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
430 440 450 460 470 480
490 500 510 520
pF1KSD DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
::::::::::::::::::::::::::::::::::::::::
NP_006 DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
490 500 510 520
>>XP_006723957 (OMIM: 607662) PREDICTED: spermatogenesis (520 aa)
initn: 3489 init1: 3489 opt: 3489 Z-score: 2883.6 bits: 543.2 E(85289): 7e-154
Smith-Waterman score: 3489; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)
10 20 30 40 50 60
pF1KSD MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
430 440 450 460 470 480
490 500 510 520
pF1KSD DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
::::::::::::::::::::::::::::::::::::::::
XP_006 DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
490 500 510 520
>>XP_011527418 (OMIM: 607662) PREDICTED: spermatogenesis (520 aa)
initn: 3489 init1: 3489 opt: 3489 Z-score: 2883.6 bits: 543.2 E(85289): 7e-154
Smith-Waterman score: 3489; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)
10 20 30 40 50 60
pF1KSD MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
430 440 450 460 470 480
490 500 510 520
pF1KSD DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
::::::::::::::::::::::::::::::::::::::::
XP_011 DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
490 500 510 520
520 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:56:31 2016 done: Thu Nov 3 02:56:33 2016
Total Scan time: 10.850 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]