FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0757, 520 aa
  1>>>pF1KSDA0757 520 - 520 aa - 520 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9790+/-0.000894; mu= 12.3350+/- 0.054
 mean_var=136.5292+/-27.549, 0's: 0 Z-trim(111.5): 11  B-trim: 99 in 2/49
 Lambda= 0.109764
 statistics sampled from 12459 (12468) to 12459 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.383), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(32554)
CCDS13422.1 SPATA2 gene_id:9825|Hs108|chr20        ( 520) 3489 563.9 1.6e-160


>>CCDS13422.1 SPATA2 gene_id:9825|Hs108|chr20             (520 aa)
 initn: 3489 init1: 3489 opt: 3489  Z-score: 2995.6  bits: 563.9 E(32554): 1.6e-160
Smith-Waterman score: 3489; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KSD MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
              430       440       450       460       470       480

              490       500       510       520
pF1KSD DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
       ::::::::::::::::::::::::::::::::::::::::
CCDS13 DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
              490       500       510       520




520 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:56:30 2016 done: Thu Nov  3 02:56:31 2016
 Total Scan time:  3.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]