FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0719, 608 aa
  1>>>pF1KSDA0719 608 - 608 aa - 608 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9811+/-0.000947; mu= 13.7054+/- 0.057
 mean_var=143.4901+/-28.959, 0's: 0 Z-trim(110.1): 42  B-trim: 62 in 1/50
 Lambda= 0.107069
 statistics sampled from 11291 (11330) to 11291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.348), width:  16
 Scan time:  3.870

The best scores are:                                      opt bits E(32554)
CCDS33807.1 TOMM70 gene_id:9868|Hs108|chr3         ( 608) 4004 630.3 2.2e-180


>>CCDS33807.1 TOMM70 gene_id:9868|Hs108|chr3              (608 aa)
 initn: 4004 init1: 4004 opt: 4004  Z-score: 3352.0  bits: 630.3 E(32554): 2.2e-180
Smith-Waterman score: 4004; 100.0% identity (100.0% similar) in 608 aa overlap (1-608:1-608)

               10        20        30        40        50        60
pF1KSD MAASKPVEAAVVAAAVPSSGSGVGGGGTAGPGTGGLPRWQLALAVGAPLLLGAGAIYLWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAASKPVEAAVVAAAVPSSGSGVGGGGTAGPGTGGLPRWQLALAVGAPLLLGAGAIYLWS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RQQRRREARGRGDASGLKRNSERKTPEGRASPAPGSGHPEGPGAHLDMNSLDRAQAAKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RQQRRREARGRGDASGLKRNSERKTPEGRASPAPGSGHPEGPGAHLDMNSLDRAQAAKNK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GNKYFKAGKYEQAIQCYTEAISLCPTEKNVDLSTFYQNRAAAFEQLQKWKEVAQDCTKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GNKYFKAGKYEQAIQCYTEAISLCPTEKNVDLSTFYQNRAAAFEQLQKWKEVAQDCTKAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD ELNPKYVKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELNPKYVKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KEKYKNREPLMPSPQFIKSYFSSFTDDIISQPMLKGEKSDEDKDKEGEALEVKENSGYLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KEKYKNREPLMPSPQFIKSYFSSFTDDIISQPMLKGEKSDEDKDKEGEALEVKENSGYLK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AKQYMEEENYDKIISECSKEIDAEGKYMAEALLLRATFYLLIGNANAAKPDLDKVISLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AKQYMEEENYDKIISECSKEIDAEGKYMAEALLLRATFYLLIGNANAAKPDLDKVISLKE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD ANVKLRANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQNADVYHHRGQLKILLDQVEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ANVKLRANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQNADVYHHRGQLKILLDQVEEA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VADFDECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKFPRCAEGYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VADFDECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKFPRCAEGYA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD LYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDRGLELISKAIEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDRGLELISKAIEI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD DNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAHAQTEVAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAHAQTEVAKK
              550       560       570       580       590       600

               
pF1KSD YGLKPPTL
       ::::::::
CCDS33 YGLKPPTL
               




608 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:46:50 2016 done: Thu Nov  3 02:46:51 2016
 Total Scan time:  3.870 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]