Result of FASTA (ccds) for
pF1KSDA0717
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0717, 727 aa
1>>>pF1KSDA0717 727 - 727 aa - 727 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0912+/-0.000854; mu= 13.7418+/- 0.052
mean_var=157.0832+/-31.714, 0's: 0 Z-trim(112.6): 41 B-trim: 96 in 1/51
Lambda= 0.102331
statistics sampled from 13325 (13362) to 13325 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.41), width: 16
Scan time: 3.210
The best scores are: opt bits E(32554)
CCDS6034.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 727) 4989 748.7 6.9e-216
CCDS55211.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 734) 4989 748.7 7e-216
CCDS55210.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 749) 4989 748.8 7.1e-216
CCDS7261.1 RHOBTB1 gene_id:9886|Hs108|chr10 ( 696) 1814 280.0 8.5e-75
CCDS2795.1 RHOA gene_id:387|Hs108|chr3 ( 193) 385 68.5 1.1e-11
CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7 ( 211) 369 66.2 5.9e-11
CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 ( 192) 365 65.6 8.3e-11
CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 ( 192) 365 65.6 8.3e-11
>>CCDS6034.1 RHOBTB2 gene_id:23221|Hs108|chr8 (727 aa)
initn: 4989 init1: 4989 opt: 4989 Z-score: 3989.3 bits: 748.7 E(32554): 6.9e-216
Smith-Waterman score: 4989; 100.0% identity (100.0% similar) in 727 aa overlap (1-727:1-727)
10 20 30 40 50 60
pF1KSD MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VCQEVLERSRDVVDDVSVSLRLWDTFGDHHKDRRFAYGRSDVVVLCFSIANPNSLHHVKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VCQEVLERSRDVVDDVSVSLRLWDTFGDHHKDRRFAYGRSDVVVLCFSIANPNSLHHVKT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD MWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVAKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVAKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LGIPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWKSHLRNVQRPLLQAPFLPPKPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LGIPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWKSHLRNVQRPLLQAPFLPPKPPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRIFAHKIYLSTSSSKFYDLFLMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRIFAHKIYLSTSSSKFYDLFLMDL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SEGELGGPSEPGGTHPEDHQGHSDQHHHHHHHHHGRDFLLRAASFDVCESVDEAGGSGPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SEGELGGPSEPGGTHPEDHQGHSDQHHHHHHHHHGRDFLLRAASFDVCESVDEAGGSGPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GLRASTSDGILRGNGTGYLPGRGRVLSSWSRAFVSIQEEMAEDPLTYKSRLMVVVKMDSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GLRASTSDGILRGNGTGYLPGRGRVLSSWSRAFVSIQEEMAEDPLTYKSRLMVVVKMDSS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD IQPGPFRAVLKYLYTGELDENERDLMHIAHIAELLEVFDLRMMVANILNNEAFMNQEITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IQPGPFRAVLKYLYTGELDENERDLMHIAHIAELLEVFDLRMMVANILNNEAFMNQEITK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD AFHVRRTNRVKECLAKGTFSDVTFILDDGTISAHKPLLISSCDWMAAMFGGPFVESSTRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 AFHVRRTNRVKECLAKGTFSDVTFILDDGTISAHKPLLISSCDWMAAMFGGPFVESSTRE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD VVFPYTSKSCMRAVLEYLYTGMFTSSPDLDDMKLIILANRLCLPHLVALTEQYTVTGLME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VVFPYTSKSCMRAVLEYLYTGMFTSSPDLDDMKLIILANRLCLPHLVALTEQYTVTGLME
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD ATQMMVDIDGDVLVFLELAQFHCAYQLADWCLHHICTNYNNVCRKFPRDMKAMSPENQEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ATQMMVDIDGDVLVFLELAQFHCAYQLADWCLHHICTNYNNVCRKFPRDMKAMSPENQEY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD FEKHRWPPVWYLKEEDHYQRARKEREKEDYLHLKRQPKRRWLFWNSPSSPSSSAASSSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FEKHRWPPVWYLKEEDHYQRARKEREKEDYLHLKRQPKRRWLFWNSPSSPSSSAASSSSP
670 680 690 700 710 720
pF1KSD SSSSAVV
:::::::
CCDS60 SSSSAVV
>>CCDS55211.1 RHOBTB2 gene_id:23221|Hs108|chr8 (734 aa)
initn: 4989 init1: 4989 opt: 4989 Z-score: 3989.2 bits: 748.7 E(32554): 7e-216
Smith-Waterman score: 4989; 100.0% identity (100.0% similar) in 727 aa overlap (1-727:8-734)
10 20 30 40 50
pF1KSD MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MKARSRLMDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD WAIDQYRVCQEVLERSRDVVDDVSVSLRLWDTFGDHHKDRRFAYGRSDVVVLCFSIANPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WAIDQYRVCQEVLERSRDVVDDVSVSLRLWDTFGDHHKDRRFAYGRSDVVVLCFSIANPN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD SLHHVKTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SLHHVKTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KSD GREVAKELGIPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWKSHLRNVQRPLLQAPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GREVAKELGIPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWKSHLRNVQRPLLQAPF
190 200 210 220 230 240
240 250 260 270 280 290
pF1KSD LPPKPPPPIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRIFAHKIYLSTSSSKFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LPPKPPPPIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRIFAHKIYLSTSSSKFY
250 260 270 280 290 300
300 310 320 330 340 350
pF1KSD DLFLMDLSEGELGGPSEPGGTHPEDHQGHSDQHHHHHHHHHGRDFLLRAASFDVCESVDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DLFLMDLSEGELGGPSEPGGTHPEDHQGHSDQHHHHHHHHHGRDFLLRAASFDVCESVDE
310 320 330 340 350 360
360 370 380 390 400 410
pF1KSD AGGSGPAGLRASTSDGILRGNGTGYLPGRGRVLSSWSRAFVSIQEEMAEDPLTYKSRLMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AGGSGPAGLRASTSDGILRGNGTGYLPGRGRVLSSWSRAFVSIQEEMAEDPLTYKSRLMV
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD VVKMDSSIQPGPFRAVLKYLYTGELDENERDLMHIAHIAELLEVFDLRMMVANILNNEAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VVKMDSSIQPGPFRAVLKYLYTGELDENERDLMHIAHIAELLEVFDLRMMVANILNNEAF
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD MNQEITKAFHVRRTNRVKECLAKGTFSDVTFILDDGTISAHKPLLISSCDWMAAMFGGPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MNQEITKAFHVRRTNRVKECLAKGTFSDVTFILDDGTISAHKPLLISSCDWMAAMFGGPF
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD VESSTREVVFPYTSKSCMRAVLEYLYTGMFTSSPDLDDMKLIILANRLCLPHLVALTEQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VESSTREVVFPYTSKSCMRAVLEYLYTGMFTSSPDLDDMKLIILANRLCLPHLVALTEQY
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD TVTGLMEATQMMVDIDGDVLVFLELAQFHCAYQLADWCLHHICTNYNNVCRKFPRDMKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TVTGLMEATQMMVDIDGDVLVFLELAQFHCAYQLADWCLHHICTNYNNVCRKFPRDMKAM
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD SPENQEYFEKHRWPPVWYLKEEDHYQRARKEREKEDYLHLKRQPKRRWLFWNSPSSPSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SPENQEYFEKHRWPPVWYLKEEDHYQRARKEREKEDYLHLKRQPKRRWLFWNSPSSPSSS
670 680 690 700 710 720
720
pF1KSD AASSSSPSSSSAVV
::::::::::::::
CCDS55 AASSSSPSSSSAVV
730
>>CCDS55210.1 RHOBTB2 gene_id:23221|Hs108|chr8 (749 aa)
initn: 4989 init1: 4989 opt: 4989 Z-score: 3989.1 bits: 748.8 E(32554): 7.1e-216
Smith-Waterman score: 4989; 100.0% identity (100.0% similar) in 727 aa overlap (1-727:23-749)
10 20 30
pF1KSD MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNA
::::::::::::::::::::::::::::::::::::::
CCDS55 MQAWRKGPDGPQKTSSDSMSRLMDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNA
10 20 30 40 50 60
40 50 60 70 80 90
pF1KSD TLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDDVSVSLRLWDTFGDHHKDRRFAYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDDVSVSLRLWDTFGDHHKDRRFAYG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KSD RSDVVVLCFSIANPNSLHHVKTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RSDVVVLCFSIANPNSLHHVKTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRP
130 140 150 160 170 180
160 170 180 190 200 210
pF1KSD LARPIKPNEILPPEKGREVAKELGIPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LARPIKPNEILPPEKGREVAKELGIPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWK
190 200 210 220 230 240
220 230 240 250 260 270
pF1KSD SHLRNVQRPLLQAPFLPPKPPPPIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SHLRNVQRPLLQAPFLPPKPPPPIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRI
250 260 270 280 290 300
280 290 300 310 320 330
pF1KSD FAHKIYLSTSSSKFYDLFLMDLSEGELGGPSEPGGTHPEDHQGHSDQHHHHHHHHHGRDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FAHKIYLSTSSSKFYDLFLMDLSEGELGGPSEPGGTHPEDHQGHSDQHHHHHHHHHGRDF
310 320 330 340 350 360
340 350 360 370 380 390
pF1KSD LLRAASFDVCESVDEAGGSGPAGLRASTSDGILRGNGTGYLPGRGRVLSSWSRAFVSIQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LLRAASFDVCESVDEAGGSGPAGLRASTSDGILRGNGTGYLPGRGRVLSSWSRAFVSIQE
370 380 390 400 410 420
400 410 420 430 440 450
pF1KSD EMAEDPLTYKSRLMVVVKMDSSIQPGPFRAVLKYLYTGELDENERDLMHIAHIAELLEVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EMAEDPLTYKSRLMVVVKMDSSIQPGPFRAVLKYLYTGELDENERDLMHIAHIAELLEVF
430 440 450 460 470 480
460 470 480 490 500 510
pF1KSD DLRMMVANILNNEAFMNQEITKAFHVRRTNRVKECLAKGTFSDVTFILDDGTISAHKPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DLRMMVANILNNEAFMNQEITKAFHVRRTNRVKECLAKGTFSDVTFILDDGTISAHKPLL
490 500 510 520 530 540
520 530 540 550 560 570
pF1KSD ISSCDWMAAMFGGPFVESSTREVVFPYTSKSCMRAVLEYLYTGMFTSSPDLDDMKLIILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ISSCDWMAAMFGGPFVESSTREVVFPYTSKSCMRAVLEYLYTGMFTSSPDLDDMKLIILA
550 560 570 580 590 600
580 590 600 610 620 630
pF1KSD NRLCLPHLVALTEQYTVTGLMEATQMMVDIDGDVLVFLELAQFHCAYQLADWCLHHICTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NRLCLPHLVALTEQYTVTGLMEATQMMVDIDGDVLVFLELAQFHCAYQLADWCLHHICTN
610 620 630 640 650 660
640 650 660 670 680 690
pF1KSD YNNVCRKFPRDMKAMSPENQEYFEKHRWPPVWYLKEEDHYQRARKEREKEDYLHLKRQPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YNNVCRKFPRDMKAMSPENQEYFEKHRWPPVWYLKEEDHYQRARKEREKEDYLHLKRQPK
670 680 690 700 710 720
700 710 720
pF1KSD RRWLFWNSPSSPSSSAASSSSPSSSSAVV
:::::::::::::::::::::::::::::
CCDS55 RRWLFWNSPSSPSSSAASSSSPSSSSAVV
730 740
>>CCDS7261.1 RHOBTB1 gene_id:9886|Hs108|chr10 (696 aa)
initn: 3279 init1: 1811 opt: 1814 Z-score: 1456.3 bits: 280.0 E(32554): 8.5e-75
Smith-Waterman score: 3282; 68.0% identity (85.3% similar) in 715 aa overlap (1-711:1-694)
10 20 30 40 50 60
pF1KSD MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYR
::.::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS72 MDADMDYERPNVETIKCVVVGDNAVGKTRLICARACNTTLTQYQLLATHVPTVWAIDQYR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VCQEVLERSRDVVDDVSVSLRLWDTFGDHHKDRRFAYGRSDVVVLCFSIANPNSLHHVKT
::::::::::::::.::::::::::::::::::::::::::::::::::::::::.:::.
CCDS72 VCQEVLERSRDVVDEVSVSLRLWDTFGDHHKDRRFAYGRSDVVVLCFSIANPNSLNHVKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD MWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVAKE
::::::::::::.::::::::::::::::::::::::::::::: ..:::::::::::::
CCDS72 MWYPEIKHFCPRTPVILVGCQLDLRYADLEAVNRARRPLARPIKRGDILPPEKGREVAKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LGIPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWKSHLRNVQRPLLQAPFLPPKPPP
::.::::::: :::::::::::::::::::::::::::::..::.::::::::::: ::
CCDS72 LGLPYYETSVFDQFGIKDVFDNAIRAALISRRHLQFWKSHLKKVQKPLLQAPFLPPKAPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRIFAHKIYLSTSSSKFYDLFLMDL
:.: .:. :: . . : ::..::::::...::.. .::::.:::.::::::::::::.
CCDS72 PVIKIPECPSMGTNEAACLLDNPLCADVLFILQDQEHIFAHRIYLATSSSKFYDLFLMEC
250 260 270 280 290 300
310 320 330 340 350
pF1KSD SEGELGGPSEPGGTHPEDHQGHSDQHHHHHHHHHGRDFLLRAASFDVCESVDEAGGSGP-
:. :.:. .: ... ...::: : : : : .:. :
CCDS72 EES-------PNGS-----EGACEKE------KQSRDFQGRILSVDPEEEREEGPPRIPQ
310 320 330 340
360 370 380 390 400 410
pF1KSD AGLRASTSDGILRGNGT---GYLPGRGRVLSSWSRAFVSIQEEMAEDPLTYKSRLMVVVK
: :.. ..... : : .: . ..:..::..:.....:: .:.. . :.::.
CCDS72 ADQWKSSNKSLVEALGLEAEGAVP-ETQTLTGWSKGFIGMHREMQVNPISKRMGPMTVVR
350 360 370 380 390 400
420 430 440 450 460 470
pF1KSD MDSSIQPGPFRAVLKYLYTGELDENERDLMHIAHIAELLEVFDLRMMVANILNNEAFMNQ
::.:.::::::..:..::::.:::.:.::. .:.:::.::.::::::: ::.:.::::::
CCDS72 MDASVQPGPFRTLLQFLYTGQLDEKEKDLVGLAQIAEVLEMFDLRMMVENIMNKEAFMNQ
410 420 430 440 450 460
480 490 500 510 520 530
pF1KSD EITKAFHVRRTNRVKECLAKGTFSDVTFILDDGTISAHKPLLISSCDWMAAMFGGPFVES
:::::::::..::.::::.::::::::: ::::.::::::::: ::.:::::::: ::::
CCDS72 EITKAFHVRKANRIKECLSKGTFSDVTFKLDDGAISAHKPLLICSCEWMAAMFGGSFVES
470 480 490 500 510 520
540 550 560 570 580 590
pF1KSD STREVVFPYTSKSCMRAVLEYLYTGMFTSSPDLDDMKLIILANRLCLPHLVALTEQYTVT
.. :: .: .: :.:::.:::: ... . ::: ..:: ::::.::::::::.::..:
CCDS72 ANSEVYLPNINKISMQAVLDYLYTKQLSPNLDLDPLELIALANRFCLPHLVALAEQHAVQ
530 540 550 560 570 580
600 610 620 630 640 650
pF1KSD GLMEATQMMVDIDGDVLVFLELAQFHCAYQLADWCLHHICTNYNNVCRKFPRDMKAMSPE
: .:. : :::.:: .::::::: :.::: :::::::::::.:: :: ...:. : .
CCDS72 ELTKAATSGVGIDGEVLSYLELAQFHNAHQLAAWCLHHICTNYNSVCSKFRKEIKSKSAD
590 600 610 620 630 640
660 670 680 690 700 710
pF1KSD NQEYFEKHRWPPVWYLKEEDHYQRARKEREKEDYLHLKRQPKRRWLFWNSPSSPSSSAAS
::::::.:::::::::::::::::...:::::: :.. .:.: :::: ::.
CCDS72 NQEYFERHRWPPVWYLKEEDHYQRVKREREKEDIALNKHRSRRKWCFWNS--SPAVA
650 660 670 680 690
720
pF1KSD SSSPSSSSAVV
>>CCDS2795.1 RHOA gene_id:387|Hs108|chr3 (193 aa)
initn: 350 init1: 227 opt: 385 Z-score: 323.4 bits: 68.5 E(32554): 1.1e-11
Smith-Waterman score: 410; 39.5% identity (67.0% similar) in 200 aa overlap (16-212:7-183)
10 20 30 40 50 60
pF1KSD MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYR
: :.:::.: ::: :. .... :. ..::::. ..:
CCDS27 MAAIRKKLVIVGDGACGKTCLL------IVFSKDQFPEVYVPTVF--ENYV
10 20 30 40
70 80 90 100 110
pF1KSD VCQEVLERSRDVVDDVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLHHV
. :: : .: : :::: : :. . : ..: .::...:::: .:.::...
CCDS27 ADIEV--------DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI
50 60 70 80 90
120 130 140 150 160 170
pF1KSD KTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVA
: ::.::::: .:.:::: . ::: . ..:: ::. .: .: . ::.::..:
CCDS27 PEKWTPEVKHFCPNVPIILVGNKKDLRNDE-----HTRRELAK-MK-QEPVKPEEGRDMA
100 110 120 130 140
180 190 200 210 220 230
pF1KSD KELG-IPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWKSHLRNVQRPLLQAPFLPPK
...: . :.: :. .. :...::. : :::: .::
CCDS27 NRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL
150 160 170 180 190
240 250 260 270 280 290
pF1KSD PPPPIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRIFAHKIYLSTSSSKFYDLFL
>>CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7 (211 aa)
initn: 381 init1: 207 opt: 369 Z-score: 310.1 bits: 66.2 E(32554): 5.9e-11
Smith-Waterman score: 396; 37.9% identity (61.6% similar) in 219 aa overlap (12-208:1-196)
10 20 30 40 50 60
pF1KSD MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYR
...::::::::.::::: :. . . :: .: .:::. :.:
CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY------IPTVF--DNYS
10 20 30 40
70 80 90
pF1KSD VCQEVLERSRDVVDDVSVSLRLWDTFGDHHKDRRF----------AYGR-----------
. .:. :: :.: :::: :.. :: .::.
CCDS53 A--NVM------VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPI
50 60 70 80 90
100 110 120 130 140 150
pF1KSD SDVVVLCFSIANPNSLHHVKTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPL
.:: ..:::...: :...:.. ::::..: :: .:.:::: .:::: : ..... ..
CCDS53 ADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR-DDKDTIEKLKEKK
100 110 120 130 140 150
160 170 180 190 200 210
pF1KSD ARPIKPNEILPPEKGREVAKELG-IPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWK
:: : .: .:::.: . : : :...: :.: :::.::::.:
CCDS53 LTPIT----YP--QGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKR
160 170 180 190 200
220 230 240 250 260 270
pF1KSD SHLRNVQRPLLQAPFLPPKPPPPIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRI
CCDS53 KCLLL
210
>>CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 (192 aa)
initn: 348 init1: 229 opt: 365 Z-score: 307.5 bits: 65.6 E(32554): 8.3e-11
Smith-Waterman score: 441; 41.0% identity (67.5% similar) in 200 aa overlap (12-208:1-177)
10 20 30 40 50 60
pF1KSD MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYR
...::::::::.::::: :. . . :: .: .:::. :.:
CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY------IPTVF--DNYS
10 20 30 40
70 80 90 100 110
pF1KSD VCQEVLERSRDVVDDVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLHHV
. .:. :: :.: :::: : :. . : ..: ..:: ..:::...: :...:
CCDS53 A--NVM------VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV
50 60 70 80 90
120 130 140 150 160 170
pF1KSD KTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVA
.. ::::..: :: .:.:::: .:::: : ..... .. :: : .: .:
CCDS53 RAKWYPEVRHHCPNTPIILVGTKLDLR-DDKDTIEKLKEKKLTPIT----YP--QGLAMA
100 110 120 130 140
180 190 200 210 220 230
pF1KSD KELG-IPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWKSHLRNVQRPLLQAPFLPPK
::.: . : : :...: :.: :::.::::.:
CCDS53 KEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL
150 160 170 180 190
240 250 260 270 280 290
pF1KSD PPPPIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRIFAHKIYLSTSSSKFYDLFL
>>CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 (192 aa)
initn: 346 init1: 227 opt: 365 Z-score: 307.5 bits: 65.6 E(32554): 8.3e-11
Smith-Waterman score: 441; 41.0% identity (67.5% similar) in 200 aa overlap (12-208:1-177)
10 20 30 40 50 60
pF1KSD MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYR
...::::::::.::::: :. . . :: .: .:::. :.:
CCDS11 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY------IPTVF--DNYS
10 20 30 40
70 80 90 100 110
pF1KSD VCQEVLERSRDVVDDVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLHHV
. .:. :: :.: :::: : :. . : ..: ..:: ..:::...: :...:
CCDS11 A--NVM------VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV
50 60 70 80 90
120 130 140 150 160 170
pF1KSD KTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVA
.. ::::..: ::..:..::: .:::: : ....: : :: : .: .:
CCDS11 RAKWYPEVRHHCPHTPILLVGTKLDLR-DDKDTIERLRDKKLAPIT----YP--QGLAMA
100 110 120 130 140
180 190 200 210 220 230
pF1KSD KELG-IPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWKSHLRNVQRPLLQAPFLPPK
.:.: . : : :...: :.: :::.::::.:
CCDS11 REIGSVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKPGKKCTVF
150 160 170 180 190
240 250 260 270 280 290
pF1KSD PPPPIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRIFAHKIYLSTSSSKFYDLFL
727 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:46:16 2016 done: Thu Nov 3 02:46:16 2016
Total Scan time: 3.210 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]