FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0649, 1209 aa
  1>>>pF1KSDA0649 1209 - 1209 aa - 1209 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4397+/-0.000909; mu= 5.5881+/- 0.055
 mean_var=243.2034+/-48.685, 0's: 0 Z-trim(114.2): 18  B-trim: 0 in 0/53
 Lambda= 0.082241
 statistics sampled from 14774 (14787) to 14774 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.454), width:  16
 Scan time:  4.470

The best scores are:                                      opt bits E(32554)
CCDS6988.1 PPP1R26 gene_id:9858|Hs108|chr9         (1209) 8126 978.0       0


>>CCDS6988.1 PPP1R26 gene_id:9858|Hs108|chr9              (1209 aa)
 initn: 8126 init1: 8126 opt: 8126  Z-score: 5220.3  bits: 978.0 E(32554):    0
Smith-Waterman score: 8126; 99.9% identity (100.0% similar) in 1209 aa overlap (1-1209:1-1209)

               10        20        30        40        50        60
pF1KSD MFLMNASPVVALQSKWEAFGPPGSCRFPRCFSEADEGVESASVSARVQMLISTLQRDGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MFLMNASPVVALQSKWEAFGPPGSCRFPRCFSEADEGVESASVSARVQMLISTLQRDGAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RGTSDERAAQRGHRAEGCHDARPAAKPTVHKEPPALAVCGLVADFDPMGEEETTDFGPLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RGTSDERAAQRGHRAEGCHDARPAAKPTVHKEPPALAVCGLVADFDPMGEEETTDFGPLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LDSDSDDSVDRDIEEAIQEYLKAKSGAAQPGAGGAQPGAAQPSRAAGGGSRCKPEPAHGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LDSDSDDSVDRDIEEAIQEYLKAKSGAAQPGAGGAQPGAAQPSRAAGGGSRCKPEPAHGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD APTALCPPKLVPGSGGGPGSQVGSSKDQGSASPVSVSSDDSFEQSIRAEIEQFLNEKRQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 APTALCPPKLVPGSGGGPGSQVGSSKDQGSASPVSVSSDDSFEQSIRAEIEQFLNEKRQH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ETQKCDGSVEKKPDTNENSAKSLLKSHQEPPTKVVHRQGLLGVQKEFAFRKPPRLAKMNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ETQKCDGSVEKKPDTNENSAKSLLKSHQEPPTKVVHRQGLLGVQKEFAFRKPPRLAKMNV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD QPRSLRSKVTTTQENEGSTKPATPCRPSEAAQNKGGIKRSASAARRGKRVMSAAQASEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QPRSLRSKVTTTQENEGSTKPATPCRPSEAAQNKGGIKRSASAARRGKRVMSAAQASEAS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD DSSSDDGIEEAIQLYQLQKTRKEADGDLPQRVQLREERAPDPPAHSTSSATKSALPETHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 DSSSDDGIEEAIQLYQLQKTRKEADGDLPQRVQLREERAPDPPAHSTSSATKSALPETHR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KTPSKKKLVATKTMDPGPGGLDTDHAPKLLKETKAPPPASPASRSEFVERSSCRADTSAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KTPSKKKLVATKTMDPGPGGLDTDHAPKLLKETKAPPPASPASRSEFVERSSCRADTSAE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD LMCAEAILDISKTILPAPVEGSDGSLSASPLFYSPNVPSRSDGDSSSVDSDDSIEQEIRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LMCAEAILDISKTILPAPVEGSDGSLSASPLFYSPNVPSRSDGDSSSVDSDDSIEQEIRT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD FLALKAQSGSLLARGESCPQAAQGPLLPPGLNSQTGGHKTPLSKTPDPLLGCKRKRRGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 FLALKAQSGSLLARGESCPQAAQGPLLPPGLNSQTGGHKTPLSKTPDPLLGCKRKRRGGG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD HVRPSTPKKMQEVVKDGSQDADHSQGRAEPGHERRDLPIQGKASEALGGEGTARGPGDTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 HVRPSTPKKMQEVVKDGSQDADHSQGRAEPGHERRDLPIQGKASEALGGEGTARGPGDTR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD MSQGQGKTDEARRLDEKESSEDKSSSLDSDEDLDTAIKDLLRSKRKLKKRCREPRAACRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MSQGQGKTDEARRLDEKESSEDKSSSLDSDEDLDTAIKDLLRSKRKLKKRCREPRAACRK
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD KVRFSTAQTHFLEQLGGLRRDWKDRGPPVLKSCLSKSKRDSGEGPGKKPPSVFGSTAERM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KVRFSTAQTHFLEQLGGLRRDWKDRGPPVLKSCLSKSKRDSGEGPGKKPPSVFGSTAERM
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD RQEGAASQDAALAFRVRRPASASASEGNPFPRESQGPAPSPGSLSDDSSSVDSDDSIELE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
CCDS69 RQEGAASQDAALAFRVRRPASASASEGNPFPRESQGPAPSPGSLSDDSSSVDSNDSIELE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD IRKFLAEKAKESVSSSEVQAEGPTALGTGGPARPEVLCRKEPAPPPGVCTRSQRARGVPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 IRKFLAEKAKESVSSSEVQAEGPTALGTGGPARPEVLCRKEPAPPPGVCTRSQRARGVPH
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD LAEGLRGTESAGAQGTAGLFSQGGKGLPAAPARGDPVPPRSTSGGVSAKGLSVSRRNVYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LAEGLRGTESAGAQGTAGLFSQGGKGLPAAPARGDPVPPRSTSGGVSAKGLSVSRRNVYV
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD HKDQSPRGAEPAAKSAFGQLPSCATAGTEAGGARGTFHMGCGSPSFLTPSPGAERDAGAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 HKDQSPRGAEPAAKSAFGQLPSCATAGTEAGGARGTFHMGCGSPSFLTPSPGAERDAGAQ
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD ADRTPPWSDFAHQSRLPSPWVLRSEGRDAVWRGGVGSERDKGSEGPARGLPSLPLAGFSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ADRTPPWSDFAHQSRLPSPWVLRSEGRDAVWRGGVGSERDKGSEGPARGLPSLPLAGFSP
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD LLSTQLFHFGKGVSWGGRQAGLFSPHLGLPLQGPSFSAFREAQAGPSPVFGSPHLLAKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LLSTQLFHFGKGVSWGGRQAGLFSPHLGLPLQGPSFSAFREAQAGPSPVFGSPHLLAKKD
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KSD GGPWPTRKAQAGLSLHDRRSSGSEESILDLRYRRRVNRDDQEQDALGSDASDFSDTSTED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GGPWPTRKAQAGLSLHDRRSSGSEESILDLRYRRRVNRDDQEQDALGSDASDFSDTSTED
             1150      1160      1170      1180      1190      1200

                
pF1KSD SGGSSVVKV
       :::::::::
CCDS69 SGGSSVVKV
                




1209 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:30:12 2016 done: Thu Nov  3 02:30:12 2016
 Total Scan time:  4.470 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]