Result of FASTA (ccds) for
pF1KSDA0626
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0626, 409 aa
1>>>pF1KSDA0626 409 - 409 aa - 409 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7936+/-0.0011; mu= 5.1510+/- 0.066
mean_var=140.3406+/-27.245, 0's: 0 Z-trim(107.2): 92 B-trim: 4 in 1/52
Lambda= 0.108264
statistics sampled from 9327 (9418) to 9327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.289), width: 16
Scan time: 2.530
The best scores are: opt bits E(32554)
CCDS34103.1 MFAP3L gene_id:9848|Hs108|chr4 ( 409) 2640 424.2 1.1e-118
CCDS43281.1 MFAP3L gene_id:9848|Hs108|chr4 ( 306) 1965 318.7 4.7e-87
CCDS4324.1 MFAP3 gene_id:4238|Hs108|chr5 ( 362) 1015 170.4 2.5e-42
CCDS47319.1 MFAP3 gene_id:4238|Hs108|chr5 ( 216) 782 133.8 1.5e-31
>>CCDS34103.1 MFAP3L gene_id:9848|Hs108|chr4 (409 aa)
initn: 2640 init1: 2640 opt: 2640 Z-score: 2244.3 bits: 424.2 E(32554): 1.1e-118
Smith-Waterman score: 2640; 100.0% identity (100.0% similar) in 409 aa overlap (1-409:1-409)
10 20 30 40 50 60
pF1KSD MDRLKSHLTVCFLPSVPFLILVSTLATAKSVTNSTLNGTNVVLGSVPVIIARTDHIIVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MDRLKSHLTVCFLPSVPFLILVSTLATAKSVTNSTLNGTNVVLGSVPVIIARTDHIIVKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GNSALINCSVYGIPDPQFKWYNSIGKLLKEEEDEKERGGGKWQMHDSGLLNITKVSFSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GNSALINCSVYGIPDPQFKWYNSIGKLLKEEEDEKERGGGKWQMHDSGLLNITKVSFSDR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GKYTCVASNIYGTVNNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNITRLCMMSSHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GKYTCVASNIYGTVNNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNITRLCMMSSHLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD VPLPPLIMNCRTIMEEIMEVVGLEEQGQNFVRHTPEGQEAADRDEVYTIPNSLKRSDSPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VPLPPLIMNCRTIMEEIMEVVGLEEQGQNFVRHTPEGQEAADRDEVYTIPNSLKRSDSPA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ADSDASSLHEQPQQIAIKVSVHPQSKKEHADDQEGGQFEVKDVEETELSAEHSPETAEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ADSDASSLHEQPQQIAIKVSVHPQSKKEHADDQEGGQFEVKDVEETELSAEHSPETAEPS
310 320 330 340 350 360
370 380 390 400
pF1KSD TDVTSTELTSEEPTPVEVPDKVLPPAYLEATEPAVTHDKNTCIIYESHV
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TDVTSTELTSEEPTPVEVPDKVLPPAYLEATEPAVTHDKNTCIIYESHV
370 380 390 400
>>CCDS43281.1 MFAP3L gene_id:9848|Hs108|chr4 (306 aa)
initn: 1965 init1: 1965 opt: 1965 Z-score: 1676.4 bits: 318.7 E(32554): 4.7e-87
Smith-Waterman score: 1965; 100.0% identity (100.0% similar) in 306 aa overlap (104-409:1-306)
80 90 100 110 120 130
pF1KSD PDPQFKWYNSIGKLLKEEEDEKERGGGKWQMHDSGLLNITKVSFSDRGKYTCVASNIYGT
::::::::::::::::::::::::::::::
CCDS43 MHDSGLLNITKVSFSDRGKYTCVASNIYGT
10 20 30
140 150 160 170 180 190
pF1KSD VNNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNITRLCMMSSHLKKTEKAINEFFRTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VNNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNITRLCMMSSHLKKTEKAINEFFRTE
40 50 60 70 80 90
200 210 220 230 240 250
pF1KSD GAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLIMNCRTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLIMNCRTI
100 110 120 130 140 150
260 270 280 290 300 310
pF1KSD MEEIMEVVGLEEQGQNFVRHTPEGQEAADRDEVYTIPNSLKRSDSPAADSDASSLHEQPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEEIMEVVGLEEQGQNFVRHTPEGQEAADRDEVYTIPNSLKRSDSPAADSDASSLHEQPQ
160 170 180 190 200 210
320 330 340 350 360 370
pF1KSD QIAIKVSVHPQSKKEHADDQEGGQFEVKDVEETELSAEHSPETAEPSTDVTSTELTSEEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QIAIKVSVHPQSKKEHADDQEGGQFEVKDVEETELSAEHSPETAEPSTDVTSTELTSEEP
220 230 240 250 260 270
380 390 400
pF1KSD TPVEVPDKVLPPAYLEATEPAVTHDKNTCIIYESHV
::::::::::::::::::::::::::::::::::::
CCDS43 TPVEVPDKVLPPAYLEATEPAVTHDKNTCIIYESHV
280 290 300
>>CCDS4324.1 MFAP3 gene_id:4238|Hs108|chr5 (362 aa)
initn: 1010 init1: 717 opt: 1015 Z-score: 873.4 bits: 170.4 E(32554): 2.5e-42
Smith-Waterman score: 1017; 55.1% identity (76.9% similar) in 325 aa overlap (13-336:22-333)
10 20 30 40 50
pF1KSD MDRLKSHLTVCFLPSVPFLILVSTLATAKSVTNSTLNGTNVVLGSVPVIIA
: .: : .:: : . .: :... .. . .: .
CCDS43 MKLHCCLFTLVASIIVPAAFVLEDVDFDQMVS-LEANRSSYNASFPSSFELSASSH---S
10 20 30 40 50
60 70 80 90 100 110
pF1KSD RTDHIIVKEGNSALINCSVYGIPDPQFKWYNSIGKLLKEEEDEKERGGGKWQMHDSGLLN
: ::.:::.:. :.: . . . .:.:: :. : : . ::: :: . :. .::
CCDS43 DDDVIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQL----DGRSRGG-KWLVSDN-FLN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KSD ITKVSFSDRGKYTC-VASNIYGTVNNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNIT
::.:.:.::: ::: :.: : .. .::::::::::::.::::.:::.::::...::.:
CCDS43 ITNVAFDDRGLYTCFVTSPIRASY--SVTLRVIFTSGDMSVYYMIVCLIAFTITLILNVT
120 130 140 150 160
180 190 200 210 220 230
pF1KSD RLCMMSSHLKKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEF
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEF
170 180 190 200 210 220
240 250 260 270 280 290
pF1KSD ARYIEELARSVPLPPLIMNCRTIMEEIMEVVGLEEQGQNFVRHTPEGQEAADRDEVYTIP
:::::::::::::::::.:::...::..:.: ... ... .. : . .:.:
CCDS43 ARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDP-DDLGERIKERPALNAQGGIYVIN
230 240 250 260 270 280
300 310 320 330 340 350
pF1KSD NSLKRSDSPAADSDASSLHEQPQQIAIKVSVHPQSKKEHADDQEGGQFEVKDVEETELSA
. ::.::..::: .::.:: :.::..:::: ::. . : . :
CCDS43 PEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKSIDTESQGSSHFSPPDDIGSAE
290 300 310 320 330 340
360 370 380 390 400
pF1KSD EHSPETAEPSTDVTSTELTSEEPTPVEVPDKVLPPAYLEATEPAVTHDKNTCIIYESHV
CCDS43 SNCNYKDGAYENCQL
350 360
>>CCDS47319.1 MFAP3 gene_id:4238|Hs108|chr5 (216 aa)
initn: 790 init1: 644 opt: 782 Z-score: 680.1 bits: 133.8 E(32554): 1.5e-31
Smith-Waterman score: 782; 65.4% identity (85.6% similar) in 188 aa overlap (149-336:1-187)
120 130 140 150 160 170
pF1KSD DRGKYTCVASNIYGTVNNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNITRLCMMSSH
:.::::.:::.::::...::.:::::::::
CCDS47 MSVYYMIVCLIAFTITLILNVTRLCMMSSH
10 20 30
180 190 200 210 220 230
pF1KSD LKKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELA
:.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELA
40 50 60 70 80 90
240 250 260 270 280 290
pF1KSD RSVPLPPLIMNCRTIMEEIMEVVGLEEQGQNFVRHTPEGQEAADRDEVYTIPNSLKRSDS
:::::::::.:::...::..:.: ... ... .. : . .:.: . ::.:
CCDS47 RSVPLPPLILNCRAFVEEMFEAVRVDDP-DDLGERIKERPALNAQGGIYVINPEMGRSNS
100 110 120 130 140
300 310 320 330 340 350
pF1KSD PAADSDASSLHEQPQQIAIKVSVHPQSKKEHADDQEGGQFEVKDVEETELSAEHSPETAE
:..::: .::.:: :.::..:::: ::. . : . :
CCDS47 PGGDSDDGSLNEQGQEIAVQVSVHLQSETKSIDTESQGSSHFSPPDDIGSAESNCNYKDG
150 160 170 180 190 200
360 370 380 390 400
pF1KSD PSTDVTSTELTSEEPTPVEVPDKVLPPAYLEATEPAVTHDKNTCIIYESHV
CCDS47 AYENCQL
210
409 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:20:54 2016 done: Thu Nov 3 02:20:55 2016
Total Scan time: 2.530 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]