Result of FASTA (omim) for
pF1KSDA0607
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0607, 712 aa
1>>>pF1KSDA0607 712 - 712 aa - 712 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9355+/-0.000363; mu= 22.3858+/- 0.023
mean_var=69.5834+/-13.848, 0's: 0 Z-trim(114.0): 16 B-trim: 1250 in 1/52
Lambda= 0.153752
statistics sampled from 23661 (23677) to 23661 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.278), width: 16
Scan time: 11.750
The best scores are: opt bits E(85289)
NP_001014841 (OMIM: 608458) neurochondrin isoform ( 712) 4722 1056.9 0
NP_055099 (OMIM: 608458) neurochondrin isoform 1 [ ( 729) 4722 1056.9 0
NP_001014839 (OMIM: 608458) neurochondrin isoform ( 729) 4722 1056.9 0
>>NP_001014841 (OMIM: 608458) neurochondrin isoform 2 [H (712 aa)
initn: 4722 init1: 4722 opt: 4722 Z-score: 5655.0 bits: 1056.9 E(85289): 0
Smith-Waterman score: 4722; 100.0% identity (100.0% similar) in 712 aa overlap (1-712:1-712)
10 20 30 40 50 60
pF1KSD MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPEC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD YLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEAND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEAND
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD WELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPN
610 620 630 640 650 660
670 680 690 700 710
pF1KSD SVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP
670 680 690 700 710
>>NP_055099 (OMIM: 608458) neurochondrin isoform 1 [Homo (729 aa)
initn: 4722 init1: 4722 opt: 4722 Z-score: 5654.9 bits: 1056.9 E(85289): 0
Smith-Waterman score: 4722; 100.0% identity (100.0% similar) in 712 aa overlap (1-712:18-729)
10 20 30 40
pF1KSD MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT
:::::::::::::::::::::::::::::::::::::::::::
NP_055 MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KSD KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KSD LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KSD CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KSD SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ
310 320 330 340 350 360
350 360 370 380 390 400
pF1KSD KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF
370 380 390 400 410 420
410 420 430 440 450 460
pF1KSD LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI
430 440 450 460 470 480
470 480 490 500 510 520
pF1KSD LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA
490 500 510 520 530 540
530 540 550 560 570 580
pF1KSD CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI
550 560 570 580 590 600
590 600 610 620 630 640
pF1KSD LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR
610 620 630 640 650 660
650 660 670 680 690 700
pF1KSD SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA
670 680 690 700 710 720
710
pF1KSD ALEQCLSEP
:::::::::
NP_055 ALEQCLSEP
>>NP_001014839 (OMIM: 608458) neurochondrin isoform 1 [H (729 aa)
initn: 4722 init1: 4722 opt: 4722 Z-score: 5654.9 bits: 1056.9 E(85289): 0
Smith-Waterman score: 4722; 100.0% identity (100.0% similar) in 712 aa overlap (1-712:18-729)
10 20 30 40
pF1KSD MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT
:::::::::::::::::::::::::::::::::::::::::::
NP_001 MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KSD KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KSD LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KSD CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KSD SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ
310 320 330 340 350 360
350 360 370 380 390 400
pF1KSD KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF
370 380 390 400 410 420
410 420 430 440 450 460
pF1KSD LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI
430 440 450 460 470 480
470 480 490 500 510 520
pF1KSD LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA
490 500 510 520 530 540
530 540 550 560 570 580
pF1KSD CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI
550 560 570 580 590 600
590 600 610 620 630 640
pF1KSD LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR
610 620 630 640 650 660
650 660 670 680 690 700
pF1KSD SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA
670 680 690 700 710 720
710
pF1KSD ALEQCLSEP
:::::::::
NP_001 ALEQCLSEP
712 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:16:32 2016 done: Thu Nov 3 02:16:33 2016
Total Scan time: 11.750 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]