Result of FASTA (ccds) for
pF1KSDA0582
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0582, 757 aa
1>>>pF1KSDA0582 757 - 757 aa - 757 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4520+/-0.000877; mu= 1.7022+/- 0.052
mean_var=221.3121+/-44.851, 0's: 0 Z-trim(114.2): 24 B-trim: 0 in 0/53
Lambda= 0.086213
statistics sampled from 14745 (14765) to 14745 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.454), width: 16
Scan time: 4.740
The best scores are: opt bits E(32554)
CCDS1880.2 CEP68 gene_id:23177|Hs108|chr2 ( 757) 5164 655.4 9.5e-188
CCDS82457.1 CEP68 gene_id:23177|Hs108|chr2 ( 620) 3395 435.3 1.4e-121
>>CCDS1880.2 CEP68 gene_id:23177|Hs108|chr2 (757 aa)
initn: 5164 init1: 5164 opt: 5164 Z-score: 3484.1 bits: 655.4 E(32554): 9.5e-188
Smith-Waterman score: 5164; 100.0% identity (100.0% similar) in 757 aa overlap (1-757:1-757)
10 20 30 40 50 60
pF1KSD MALGEEKAEAEASEDTKAQSYGRGSCRERELDIPGPMSGEQPPRLEAEGGLISPVWGAEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MALGEEKAEAEASEDTKAQSYGRGSCRERELDIPGPMSGEQPPRLEAEGGLISPVWGAEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IPAPTCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 IPAPTCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EKTKLSSSEEFPQTLSLPRTTTICSGHDADTEDDPSLADLPQALDLSQQPHSSGLSCLSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 EKTKLSSSEEFPQTLSLPRTTTICSGHDADTEDDPSLADLPQALDLSQQPHSSGLSCLSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD WKSVLSPGSAAQPSSCSISASSTGSSLQGHQERAEPRGGSLAKVSSSLEPVVPQEPSSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 WKSVLSPGSAAQPSSCSISASSTGSSLQGHQERAEPRGGSLAKVSSSLEPVVPQEPSSVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLPDSLPPSPDRHSPLWNPNKEYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLPDSLPPSPDRHSPLWNPNKEYE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD DLLDYTYPLRPGPQLPKHLDSRVPADPVLQDSGVDLDSFSVSPASTLKSPTNVSPNCPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DLLDYTYPLRPGPQLPKHLDSRVPADPVLQDSGVDLDSFSVSPASTLKSPTNVSPNCPPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD EATALPFSGPREPSLKQWPSRVPQKQGGMGLASWSQLASTPRAPGSRDARWERREPALRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 EATALPFSGPREPSLKQWPSRVPQKQGGMGLASWSQLASTPRAPGSRDARWERREPALRG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD AKDRLTIGKHLDMGSPQLRTRDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 AKDRLTIGKHLDMGSPQLRTRDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD EYLALPARLTQVSSLVSYLGSISTLVTLPTGDIKGQSPLEVSDSDGPASFPSSSSQSQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 EYLALPARLTQVSSLVSYLGSISTLVTLPTGDIKGQSPLEVSDSDGPASFPSSSSQSQLP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD PGAALQGSGDPEGQNPCFLRSFVRAHDSAGEGSLGSSQALGVSSGLLKTRPSLPARLDRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PGAALQGSGDPEGQNPCFLRSFVRAHDSAGEGSLGSSQALGVSSGLLKTRPSLPARLDRW
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD PFSDPDVEGQLPRKGGEQGKESLVQCVKTFCCQLEELICWLYNVADVTDHGTAARSNLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PFSDPDVEGQLPRKGGEQGKESLVQCVKTFCCQLEELICWLYNVADVTDHGTAARSNLTS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD LKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENTPVLEDVLGRIAKQSGELESH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENTPVLEDVLGRIAKQSGELESH
670 680 690 700 710 720
730 740 750
pF1KSD ADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV
:::::::::::::::::::::::::::::::::::::
CCDS18 ADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV
730 740 750
>>CCDS82457.1 CEP68 gene_id:23177|Hs108|chr2 (620 aa)
initn: 3395 init1: 3395 opt: 3395 Z-score: 2296.3 bits: 435.3 E(32554): 1.4e-121
Smith-Waterman score: 3966; 81.9% identity (81.9% similar) in 757 aa overlap (1-757:1-620)
10 20 30 40 50 60
pF1KSD MALGEEKAEAEASEDTKAQSYGRGSCRERELDIPGPMSGEQPPRLEAEGGLISPVWGAEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MALGEEKAEAEASEDTKAQSYGRGSCRERELDIPGPMSGEQPPRLEAEGGLISPVWGAEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IPAPTCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IPAPTCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EKTKLSSSEEFPQTLSLPRTTTICSGHDADTEDDPSLADLPQALDLSQQPHSSGLSCLSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EKTKLSSSEEFPQTLSLPRTTTICSGHDADTEDDPSLADLPQALDLSQQPHSSGLSCLSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD WKSVLSPGSAAQPSSCSISASSTGSSLQGHQERAEPRGGSLAKVSSSLEPVVPQEPSSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 WKSVLSPGSAAQPSSCSISASSTGSSLQGHQERAEPRGGSLAKVSSSLEPVVPQEPSSVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLPDSLPPSPDRHSPLWNPNKEYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLPDSLPPSPDRHSPLWNPNKEYE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD DLLDYTYPLRPGPQLPKHLDSRVPADPVLQDSGVDLDSFSVSPASTLKSPTNVSPNCPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DLLDYTYPLRPGPQLPKHLDSRVPADPVLQDSGVDLDSFSVSPASTLKSPTNVSPNCPPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD EATALPFSGPREPSLKQWPSRVPQKQGGMGLASWSQLASTPRAPGSRDARWERREPALRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EATALPFSGPREPSLKQWPSRVPQKQGGMGLASWSQLASTPRAPGSRDARWERREPALRG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD AKDRLTIGKHLDMGSPQLRTRDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AKDRLTIGKHLDMGSPQLRTRDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD EYLALPARLTQVSSLVSYLGSISTLVTLPTGDIKGQSPLEVSDSDGPASFPSSSSQSQLP
:::::::::::
CCDS82 EYLALPARLTQ-------------------------------------------------
490
550 560 570 580 590 600
pF1KSD PGAALQGSGDPEGQNPCFLRSFVRAHDSAGEGSLGSSQALGVSSGLLKTRPSLPARLDRW
CCDS82 ------------------------------------------------------------
610 620 630 640 650 660
pF1KSD PFSDPDVEGQLPRKGGEQGKESLVQCVKTFCCQLEELICWLYNVADVTDHGTAARSNLTS
::::::::::::::::::::::::::::::::
CCDS82 ----------------------------TFCCQLEELICWLYNVADVTDHGTAARSNLTS
500 510 520
670 680 690 700 710 720
pF1KSD LKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENTPVLEDVLGRIAKQSGELESH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENTPVLEDVLGRIAKQSGELESH
530 540 550 560 570 580
730 740 750
pF1KSD ADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV
:::::::::::::::::::::::::::::::::::::
CCDS82 ADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV
590 600 610 620
757 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:10:40 2016 done: Thu Nov 3 02:10:41 2016
Total Scan time: 4.740 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]