FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0427, 598 aa
  1>>>pF1KSDA0427 598 - 598 aa - 598 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8776+/-0.000927; mu= 7.8642+/- 0.056
 mean_var=156.8412+/-31.408, 0's: 0 Z-trim(111.0): 20  B-trim: 0 in 0/52
 Lambda= 0.102410
 statistics sampled from 12056 (12069) to 12056 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.371), width:  16
 Scan time:  3.790

The best scores are:                                      opt bits E(32554)
CCDS11935.1 CTIF gene_id:9811|Hs108|chr18          ( 598) 4040 609.0 5.5e-174
CCDS45864.1 CTIF gene_id:9811|Hs108|chr18          ( 600) 4026 606.9 2.3e-173


>>CCDS11935.1 CTIF gene_id:9811|Hs108|chr18               (598 aa)
 initn: 4040 init1: 4040 opt: 4040  Z-score: 3237.1  bits: 609.0 E(32554): 5.5e-174
Smith-Waterman score: 4040; 100.0% identity (100.0% similar) in 598 aa overlap (1-598:1-598)

               10        20        30        40        50        60
pF1KSD MENSSAASASSEAGSSRSQEIEELERFIDSYVLEYQVQGLLADKTEGDGESERTQSHISQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MENSSAASASSEAGSSRSQEIEELERFIDSYVLEYQVQGLLADKTEGDGESERTQSHISQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD WTADCSEPLDSSCSFSRGRAPPQQNGSKDNSLDMLGTDIWAANTFDSFSGATWDLQPEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WTADCSEPLDSSCSFSRGRAPPQQNGSKDNSLDMLGTDIWAANTFDSFSGATWDLQPEKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFTQFHRKVRHTPKQPLPHIDREGCGKGKLEDGDGINLNDIEKVLPAWQGYHPMPHEVEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DFTQFHRKVRHTPKQPLPHIDREGCGKGKLEDGDGINLNDIEKVLPAWQGYHPMPHEVEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD AHTKKLFRRRRNDRRRQQRPPGGNKPQQHGDHQPGSAKHNRDHQKSYQGGSAPHPSGRPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AHTKKLFRRRRNDRRRQQRPPGGNKPQQHGDHQPGSAKHNRDHQKSYQGGSAPHPSGRPT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD HHGYSQNRRWHHGNMKHPPGDKGEAGAHRNAKETMTIENPKLEDTAGDTGHSSLEAPRSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HHGYSQNRRWHHGNMKHPPGDKGEAGAHRNAKETMTIENPKLEDTAGDTGHSSLEAPRSP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DTLAPVASERLPPQQSGGPEVETKRKDSILPERIGERPKITLLQSSKDRLRRRLKEKDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DTLAPVASERLPPQQSGGPEVETKRKDSILPERIGERPKITLLQSSKDRLRRRLKEKDEV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD AVETTTPQQNKMDKLIEILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AVETTTPQQNKMDKLIEILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AVSDRSFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQKDFTVREELQQQDVERWLGFITF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AVSDRSFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQKDFTVREELQQQDVERWLGFITF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD LCEVFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDVKEDAVLCCSMELQSTGRLLEEQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LCEVFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDVKEDAVLCCSMELQSTGRLLEEQLP
              490       500       510       520       530       540

              550       560       570       580       590        
pF1KSD EMMTELLASARDKMLCPSESMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EMMTELLASARDKMLCPSESMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA
              550       560       570       580       590        

>>CCDS45864.1 CTIF gene_id:9811|Hs108|chr18               (600 aa)
 initn: 2515 init1: 2486 opt: 4026  Z-score: 3225.9  bits: 606.9 E(32554): 2.3e-173
Smith-Waterman score: 4026; 99.7% identity (99.7% similar) in 600 aa overlap (1-598:1-600)

               10        20        30        40        50        60
pF1KSD MENSSAASASSEAGSSRSQEIEELERFIDSYVLEYQVQGLLADKTEGDGESERTQSHISQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MENSSAASASSEAGSSRSQEIEELERFIDSYVLEYQVQGLLADKTEGDGESERTQSHISQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD WTADCSEPLDSSCSFSRGRAPPQQNGSKDNSLDMLGTDIWAANTFDSFSGATWDLQPEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 WTADCSEPLDSSCSFSRGRAPPQQNGSKDNSLDMLGTDIWAANTFDSFSGATWDLQPEKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFTQFHRKVRHTPKQPLPHIDREGCGKGKLEDGDGINLNDIEKVLPAWQGYHPMPHEVEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DFTQFHRKVRHTPKQPLPHIDREGCGKGKLEDGDGINLNDIEKVLPAWQGYHPMPHEVEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD AHTKKLFRRRRNDRRRQQRPPGGNKPQQHGDHQPGSAKHNRDHQKSYQGGSAPHPSGRPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AHTKKLFRRRRNDRRRQQRPPGGNKPQQHGDHQPGSAKHNRDHQKSYQGGSAPHPSGRPT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD HHGYSQNRRWHHGNMKHPPGDKGEAGAHRNAKETMTIENPKLEDTAGDTGHSSLEAPRSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HHGYSQNRRWHHGNMKHPPGDKGEAGAHRNAKETMTIENPKLEDTAGDTGHSSLEAPRSP
              250       260       270       280       290       300

              310       320       330       340       350          
pF1KSD DTLAPVASERLPPQQSGGPEVETKRKDSILPERIGERPKITLLQSSKDRLRRRLKEK--D
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
CCDS45 DTLAPVASERLPPQQSGGPEVETKRKDSILPERIGERPKITLLQSSKDRLRRRLKEKVPD
              310       320       330       340       350       360

      360       370       380       390       400       410        
pF1KSD EVAVETTTPQQNKMDKLIEILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EVAVETTTPQQNKMDKLIEILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIY
              370       380       390       400       410       420

      420       430       440       450       460       470        
pF1KSD QKAVSDRSFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQKDFTVREELQQQDVERWLGFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QKAVSDRSFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQKDFTVREELQQQDVERWLGFI
              430       440       450       460       470       480

      480       490       500       510       520       530        
pF1KSD TFLCEVFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDVKEDAVLCCSMELQSTGRLLEEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TFLCEVFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDVKEDAVLCCSMELQSTGRLLEEQ
              490       500       510       520       530       540

      540       550       560       570       580       590        
pF1KSD LPEMMTELLASARDKMLCPSESMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LPEMMTELLASARDKMLCPSESMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA
              550       560       570       580       590       600




598 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:42:36 2016 done: Thu Nov  3 01:42:37 2016
 Total Scan time:  3.790 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]