Result of FASTA (omim) for
pF1KSDA0398
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0398, 476 aa
1>>>pF1KSDA0398 476 - 476 aa - 476 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0517+/-0.000433; mu= 9.6495+/- 0.027
mean_var=109.0700+/-20.626, 0's: 0 Z-trim(113.0): 17 B-trim: 0 in 0/53
Lambda= 0.122807
statistics sampled from 22116 (22129) to 22116 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.259), width: 16
Scan time: 7.150
The best scores are: opt bits E(85289)
NP_003790 (OMIM: 603514) mRNA cap guanine-N7 methy ( 476) 3138 567.1 3.7e-161
XP_005258219 (OMIM: 603514) PREDICTED: mRNA cap gu ( 476) 3138 567.1 3.7e-161
XP_011524053 (OMIM: 603514) PREDICTED: mRNA cap gu ( 512) 3068 554.7 2.1e-157
XP_011524052 (OMIM: 603514) PREDICTED: mRNA cap gu ( 512) 3068 554.7 2.1e-157
XP_011524051 (OMIM: 603514) PREDICTED: mRNA cap gu ( 512) 3068 554.7 2.1e-157
NP_001295192 (OMIM: 603514) mRNA cap guanine-N7 me ( 504) 3065 554.2 3e-157
XP_016881550 (OMIM: 603514) PREDICTED: mRNA cap gu ( 504) 3065 554.2 3e-157
XP_011524055 (OMIM: 603514) PREDICTED: mRNA cap gu ( 334) 1922 351.6 1.9e-96
>>NP_003790 (OMIM: 603514) mRNA cap guanine-N7 methyltra (476 aa)
initn: 3138 init1: 3138 opt: 3138 Z-score: 3014.3 bits: 567.1 E(85289): 3.7e-161
Smith-Waterman score: 3138; 100.0% identity (100.0% similar) in 476 aa overlap (1-476:1-476)
10 20 30 40 50 60
pF1KSD MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
370 380 390 400 410 420
430 440 450 460 470
pF1KSD YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ
430 440 450 460 470
>>XP_005258219 (OMIM: 603514) PREDICTED: mRNA cap guanin (476 aa)
initn: 3138 init1: 3138 opt: 3138 Z-score: 3014.3 bits: 567.1 E(85289): 3.7e-161
Smith-Waterman score: 3138; 100.0% identity (100.0% similar) in 476 aa overlap (1-476:1-476)
10 20 30 40 50 60
pF1KSD MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
370 380 390 400 410 420
430 440 450 460 470
pF1KSD YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ
430 440 450 460 470
>>XP_011524053 (OMIM: 603514) PREDICTED: mRNA cap guanin (512 aa)
initn: 3154 init1: 3068 opt: 3068 Z-score: 2946.8 bits: 554.7 E(85289): 2.1e-157
Smith-Waterman score: 3068; 99.4% identity (99.6% similar) in 468 aa overlap (1-468:1-468)
10 20 30 40 50 60
pF1KSD MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
370 380 390 400 410 420
430 440 450 460 470
pF1KSD YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ
:::::::::::::::::::::::::::::::::::::::::::: .:
XP_011 YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATRSFLHGGNTLDGWWLP
430 440 450 460 470 480
XP_011 KIGVAVAVKTMKFASLIDHSFTEDFSVACSAV
490 500 510
>>XP_011524052 (OMIM: 603514) PREDICTED: mRNA cap guanin (512 aa)
initn: 3154 init1: 3068 opt: 3068 Z-score: 2946.8 bits: 554.7 E(85289): 2.1e-157
Smith-Waterman score: 3068; 99.4% identity (99.6% similar) in 468 aa overlap (1-468:1-468)
10 20 30 40 50 60
pF1KSD MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
370 380 390 400 410 420
430 440 450 460 470
pF1KSD YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ
:::::::::::::::::::::::::::::::::::::::::::: .:
XP_011 YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATRSFLHGGNTLDGWWLP
430 440 450 460 470 480
XP_011 KIGVAVAVKTMKFASLIDHSFTEDFSVACSAV
490 500 510
>>XP_011524051 (OMIM: 603514) PREDICTED: mRNA cap guanin (512 aa)
initn: 3154 init1: 3068 opt: 3068 Z-score: 2946.8 bits: 554.7 E(85289): 2.1e-157
Smith-Waterman score: 3068; 99.4% identity (99.6% similar) in 468 aa overlap (1-468:1-468)
10 20 30 40 50 60
pF1KSD MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
370 380 390 400 410 420
430 440 450 460 470
pF1KSD YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ
:::::::::::::::::::::::::::::::::::::::::::: .:
XP_011 YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATRSFLHGGNTLDGWWLP
430 440 450 460 470 480
XP_011 KIGVAVAVKTMKFASLIDHSFTEDFSVACSAV
490 500 510
>>NP_001295192 (OMIM: 603514) mRNA cap guanine-N7 methyl (504 aa)
initn: 3150 init1: 3064 opt: 3065 Z-score: 2944.1 bits: 554.2 E(85289): 3e-157
Smith-Waterman score: 3065; 98.3% identity (99.2% similar) in 473 aa overlap (1-473:1-473)
10 20 30 40 50 60
pF1KSD MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
370 380 390 400 410 420
430 440 450 460 470
pF1KSD YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ
:::::::::::::::::::::::::::::::::::::::::::: . ... :
NP_001 YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATRLTVTIMREAWLSTVG
430 440 450 460 470 480
NP_001 PGRAPVAASSVKWGTPRPAMQFIL
490 500
>>XP_016881550 (OMIM: 603514) PREDICTED: mRNA cap guanin (504 aa)
initn: 3150 init1: 3064 opt: 3065 Z-score: 2944.1 bits: 554.2 E(85289): 3e-157
Smith-Waterman score: 3065; 98.3% identity (99.2% similar) in 473 aa overlap (1-473:1-473)
10 20 30 40 50 60
pF1KSD MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSSTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEP
370 380 390 400 410 420
430 440 450 460 470
pF1KSD YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ
:::::::::::::::::::::::::::::::::::::::::::: . ... :
XP_016 YPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATRLTVTIMREAWLSTVG
430 440 450 460 470 480
XP_016 PGRAPVAASSVKWGTPRPAMQFIL
490 500
>>XP_011524055 (OMIM: 603514) PREDICTED: mRNA cap guanin (334 aa)
initn: 1946 init1: 1922 opt: 1922 Z-score: 1852.4 bits: 351.6 E(85289): 1.9e-96
Smith-Waterman score: 1922; 99.0% identity (99.3% similar) in 290 aa overlap (179-468:1-290)
150 160 170 180 190 200
pF1KSD VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK
::::::::::::::::::::::::::::::
XP_011 MKSVLIGEFLEKVRQKKKRDITVLDLGCGK
10 20 30
210 220 230 240 250 260
pF1KSD GGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI
40 50 60 70 80 90
270 280 290 300 310 320
pF1KSD DKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRL
100 110 120 130 140 150
330 340 350 360 370 380
pF1KSD EASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMK
160 170 180 190 200 210
390 400 410 420 430 440
pF1KSD LVYKKTFLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVYKKTFLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQ
220 230 240 250 260 270
450 460 470
pF1KSD VRLPLGTLSKSEWEATSIYLVFAFEKQQ
:::::::::::::::: .:
XP_011 VRLPLGTLSKSEWEATRSFLHGGNTLDGWWLPKIGVAVAVKTMKFASLIDHSFTEDFSVA
280 290 300 310 320 330
476 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:36:57 2016 done: Thu Nov 3 01:36:58 2016
Total Scan time: 7.150 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]