Result of FASTA (ccds) for
pF1KSDA0372
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0372, 1564 aa
1>>>pF1KSDA0372 1564 - 1564 aa - 1564 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2816+/-0.00147; mu= 18.7454+/- 0.088
mean_var=86.8448+/-17.583, 0's: 0 Z-trim(99.6): 73 B-trim: 0 in 0/50
Lambda= 0.137627
statistics sampled from 5733 (5801) to 5733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.506), E-opt: 0.2 (0.178), width: 16
Scan time: 4.420
The best scores are: opt bits E(32554)
CCDS4072.1 TTC37 gene_id:9652|Hs108|chr5 (1564) 10225 2041.9 0
>>CCDS4072.1 TTC37 gene_id:9652|Hs108|chr5 (1564 aa)
initn: 10225 init1: 10225 opt: 10225 Z-score: 10965.9 bits: 2041.9 E(32554): 0
Smith-Waterman score: 10225; 100.0% identity (100.0% similar) in 1564 aa overlap (1-1564:1-1564)
10 20 30 40 50 60
pF1KSD MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SAYKKAAELEPDQLLAWQGLANLYEKYNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SAYKKAAELEPDQLLAWQGLANLYEKYNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KLVDLYYQEKKHLEVARTWHKLIKTRQEQGAENEELHQLWRKLTQFLAESTEDQNNETQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KLVDLYYQEKKHLEVARTWHKLIKTRQEQGAENEELHQLWRKLTQFLAESTEDQNNETQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLFTAFENALGLSDKIPSEDHQVLYRHFIQSLSKFPHESARLKKACEGMINIYPTVQYPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LLFTAFENALGLSDKIPSEDHQVLYRHFIQSLSKFPHESARLKKACEGMINIYPTVQYPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EVLCLHLIESGNLTDEGQQYCCRLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EVLCLHLIESGNLTDEGQQYCCRLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKIVDNLGASGNSLYQRNLCLHLKAEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKIVDNLGASGNSLYQRNLCLHLKAEAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD IKLSDYDSSEEAIRTLDQISDADNIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IKLSDYDSSEEAIRTLDQISDADNIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD EVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD HFLKAARLDTYMGKVFCYLGHYYRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 HFLKAARLDTYMGKVFCYLGHYYRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD LEDMEMALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LEDMEMALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD WESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 WESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KKEDYVPALKGLGECHLMMAKAALVDYLDGKAVDYIEKALEYFTCALQHRADVSCLWKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KKEDYVPALKGLGECHLMMAKAALVDYLDGKAVDYIEKALEYFTCALQHRADVSCLWKLA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD GDACTCLYAVAPSKVNVHVLGVLLGQKEGKQVLKKNELLHLGGRCYGRALKLMSTSNTWC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GDACTCLYAVAPSKVNVHVLGVLLGQKEGKQVLKKNELLHLGGRCYGRALKLMSTSNTWC
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD DLGINYYRQAQHLAETGSNMNDLKELLEKSLHCLKKAVRLDSNNHLYWNALGVVACYSGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DLGINYYRQAQHLAETGSNMNDLKELLEKSLHCLKKAVRLDSNNHLYWNALGVVACYSGI
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD GNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIG
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD QALIAEAVGSYDTMDLFRHTTELNMHTEGALGYAYWVCTTLQDKSNRETELYQYNILQMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 QALIAEAVGSYDTMDLFRHTTELNMHTEGALGYAYWVCTTLQDKSNRETELYQYNILQMN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD AIPAAQVILNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDQDTYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 AIPAAQVILNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDQDTYN
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD VAIRNYGRLLCSTGEYDKAIQAFKSTPLEVLEDIIGFALALFMKGLYKESSKAYERALSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VAIRNYGRLLCSTGEYDKAIQAFKSTPLEVLEDIIGFALALFMKGLYKESSKAYERALSI
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD VESEQDKAHILTALAITEYKQGKTDVAKTLLFKCSILKEPTTESLQALCALGLAMQDATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VESEQDKAHILTALAITEYKQGKTDVAKTLLFKCSILKEPTTESLQALCALGLAMQDATL
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD SKAALNELLKHIKHKDSNYQRCLLTSAIYALQGRSVAVQKQISKAVHSNPGDPALWSLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SKAALNELLKHIKHKDSNYQRCLLTSAIYALQGRSVAVQKQISKAVHSNPGDPALWSLLS
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD RVVAQYAQRNAKGGVVAGNVAHILDSNHGKKALLYTAVNQLAMGSSSAEDEKNTALKTIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 RVVAQYAQRNAKGGVVAGNVAHILDSNHGKKALLYTAVNQLAMGSSSAEDEKNTALKTIQ
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD KAALLSPGDPAIWAGLMAACHADDKLALVNNTQPKRIDLYLALLSAVSASIKDEKFFENY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KAALLSPGDPAIWAGLMAACHADDKLALVNNTQPKRIDLYLALLSAVSASIKDEKFFENY
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KSD NQSLEKWSLSQAVTGLIDTGRISEAETLCTKNLKSNPDQPAVILLLRQVQCKPLLESQKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 NQSLEKWSLSQAVTGLIDTGRISEAETLCTKNLKSNPDQPAVILLLRQVQCKPLLESQKP
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KSD LPDAVLEELQKTVMSNSTSVPAWQWLAHVYQSQGMMRAAEMCYRKSLQLASQRGSWSGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LPDAVLEELQKTVMSNSTSVPAWQWLAHVYQSQGMMRAAEMCYRKSLQLASQRGSWSGKL
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KSD SSLLRLALLALKVCMANISNDHWPSLVQEATTEALKLCFCPLAVLLQALLQFKRKMGARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SSLLRLALLALKVCMANISNDHWPSLVQEATTEALKLCFCPLAVLLQALLQFKRKMGARE
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KSD TRRLLERVVYQPGYPKSIASTARWYLLRHLYAKDDYELIDVLVNNAKTHGDTRALELNQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 TRRLLERVVYQPGYPKSIASTARWYLLRHLYAKDDYELIDVLVNNAKTHGDTRALELNQR
1510 1520 1530 1540 1550 1560
pF1KSD LSSQ
::::
CCDS40 LSSQ
1564 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:31:03 2016 done: Thu Nov 3 18:31:04 2016
Total Scan time: 4.420 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]