Result of FASTA (omim) for
pF1KSDA0286
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0286, 444 aa
1>>>pF1KSDA0286 444 - 444 aa - 444 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0875+/-0.000348; mu= 18.9735+/- 0.022
mean_var=67.6060+/-13.634, 0's: 0 Z-trim(114.2): 26 B-trim: 125 in 1/51
Lambda= 0.155985
statistics sampled from 23863 (23888) to 23863 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.28), width: 16
Scan time: 9.010
The best scores are: opt bits E(85289)
NP_001124435 (OMIM: 616496) nuclear envelope integ ( 444) 2964 676.0 5.3e-194
XP_011536359 (OMIM: 616496) PREDICTED: nuclear env ( 452) 2680 612.1 9.3e-175
XP_016874566 (OMIM: 616496) PREDICTED: nuclear env ( 452) 2680 612.1 9.3e-175
XP_011536358 (OMIM: 616496) PREDICTED: nuclear env ( 492) 2680 612.1 9.9e-175
XP_016874567 (OMIM: 616496) PREDICTED: nuclear env ( 273) 1838 422.5 6.8e-118
XP_011536361 (OMIM: 616496) PREDICTED: nuclear env ( 273) 1838 422.5 6.8e-118
NP_056072 (OMIM: 616496) nuclear envelope integral ( 371) 1764 405.9 9e-113
XP_011536360 (OMIM: 616496) PREDICTED: nuclear env ( 419) 1764 406.0 9.9e-113
XP_016874568 (OMIM: 616496) PREDICTED: nuclear env ( 253) 1700 391.4 1.4e-108
XP_011536362 (OMIM: 616496) PREDICTED: nuclear env ( 269) 1110 258.7 1.4e-68
NP_001136117 (OMIM: 616497) nuclear envelope integ ( 417) 884 207.9 4e-53
XP_011508761 (OMIM: 616497) PREDICTED: nuclear env ( 348) 826 194.8 3e-49
XP_005246269 (OMIM: 616497) PREDICTED: nuclear env ( 348) 826 194.8 3e-49
XP_005246270 (OMIM: 616497) PREDICTED: nuclear env ( 276) 768 181.7 2.1e-45
XP_016858588 (OMIM: 616497) PREDICTED: nuclear env ( 389) 737 174.8 3.5e-43
XP_016858587 (OMIM: 616497) PREDICTED: nuclear env ( 392) 736 174.6 4.1e-43
XP_011508760 (OMIM: 616497) PREDICTED: nuclear env ( 377) 733 173.9 6.3e-43
XP_016858589 (OMIM: 616497) PREDICTED: nuclear env ( 387) 733 173.9 6.5e-43
>>NP_001124435 (OMIM: 616496) nuclear envelope integral (444 aa)
initn: 2964 init1: 2964 opt: 2964 Z-score: 3604.0 bits: 676.0 E(85289): 5.3e-194
Smith-Waterman score: 2964; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:1-444)
10 20 30 40 50 60
pF1KSD MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD ELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIY
370 380 390 400 410 420
430 440
pF1KSD EEASSEEEDSYSRCPAITQNNFLT
::::::::::::::::::::::::
NP_001 EEASSEEEDSYSRCPAITQNNFLT
430 440
>>XP_011536359 (OMIM: 616496) PREDICTED: nuclear envelop (452 aa)
initn: 2680 init1: 2680 opt: 2680 Z-score: 3258.5 bits: 612.1 E(85289): 9.3e-175
Smith-Waterman score: 2680; 100.0% identity (100.0% similar) in 403 aa overlap (42-444:50-452)
20 30 40 50 60 70
pF1KSD AVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEKRASQQFCYTNV
::::::::::::::::::::::::::::::
XP_011 LRTRNFQPVAKGKRQRQRRRPWETIEKHKETAETDVNVVMLQESQVCEKRASQQFCYTNV
20 30 40 50 60 70
80 90 100 110 120 130
pF1KSD LIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNV
80 90 100 110 120 130
140 150 160 170 180 190
pF1KSD GLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTG
140 150 160 170 180 190
200 210 220 230 240 250
pF1KSD MTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLL
200 210 220 230 240 250
260 270 280 290 300 310
pF1KSD SYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALC
260 270 280 290 300 310
320 330 340 350 360 370
pF1KSD TKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDC
320 330 340 350 360 370
380 390 400 410 420 430
pF1KSD SAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSY
380 390 400 410 420 430
440
pF1KSD SRCPAITQNNFLT
:::::::::::::
XP_011 SRCPAITQNNFLT
440 450
>>XP_016874566 (OMIM: 616496) PREDICTED: nuclear envelop (452 aa)
initn: 2680 init1: 2680 opt: 2680 Z-score: 3258.5 bits: 612.1 E(85289): 9.3e-175
Smith-Waterman score: 2680; 100.0% identity (100.0% similar) in 403 aa overlap (42-444:50-452)
20 30 40 50 60 70
pF1KSD AVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEKRASQQFCYTNV
::::::::::::::::::::::::::::::
XP_016 LRTRNFQPVAKGKRQRQRRRPWETIEKHKETAETDVNVVMLQESQVCEKRASQQFCYTNV
20 30 40 50 60 70
80 90 100 110 120 130
pF1KSD LIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNV
80 90 100 110 120 130
140 150 160 170 180 190
pF1KSD GLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTG
140 150 160 170 180 190
200 210 220 230 240 250
pF1KSD MTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLL
200 210 220 230 240 250
260 270 280 290 300 310
pF1KSD SYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALC
260 270 280 290 300 310
320 330 340 350 360 370
pF1KSD TKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDC
320 330 340 350 360 370
380 390 400 410 420 430
pF1KSD SAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSY
380 390 400 410 420 430
440
pF1KSD SRCPAITQNNFLT
:::::::::::::
XP_016 SRCPAITQNNFLT
440 450
>>XP_011536358 (OMIM: 616496) PREDICTED: nuclear envelop (492 aa)
initn: 2680 init1: 2680 opt: 2680 Z-score: 3257.9 bits: 612.1 E(85289): 9.9e-175
Smith-Waterman score: 2687; 92.2% identity (93.9% similar) in 446 aa overlap (2-444:61-492)
10 20
pF1KSD MAGGMK---VAVSPAVGPGPWGSGVGGGGTV
::... . .: : :: : ..:
XP_011 NPPPSPPLVSPSPIWFALHSRPRLGGLLGEAGALRARPIDSKPQGKEGGWGPGKASG---
40 50 60 70 80
30 40 50 60 70 80
pF1KSD RLLLILSGCLVYGTAETDVNVVMLQESQVCEKRASQQFCYTNVLIPKWHDIWTRIQIRVN
.:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 -----------LATAETDVNVVMLQESQVCEKRASQQFCYTNVLIPKWHDIWTRIQIRVN
90 100 110 120 130
90 100 110 120 130 140
pF1KSD SSRLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSRLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKD
140 150 160 170 180 190
150 160 170 180 190 200
pF1KSD TKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLLIIIFILS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLLIIIFILS
200 210 220 230 240 250
210 220 230 240 250 260
pF1KSD KFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMSFAVCYKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMSFAVCYKY
260 270 280 290 300 310
270 280 290 300 310 320
pF1KSD GPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQWLYITCRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQWLYITCRK
320 330 340 350 360 370
330 340 350 360 370 380
pF1KSD VCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQSPKRFAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQSPKRFAD
380 390 400 410 420 430
390 400 410 420 430 440
pF1KSD FVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNNFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNNFLT
440 450 460 470 480 490
>>XP_016874567 (OMIM: 616496) PREDICTED: nuclear envelop (273 aa)
initn: 1838 init1: 1838 opt: 1838 Z-score: 2237.5 bits: 422.5 E(85289): 6.8e-118
Smith-Waterman score: 1838; 100.0% identity (100.0% similar) in 273 aa overlap (172-444:1-273)
150 160 170 180 190 200
pF1KSD VEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLL
::::::::::::::::::::::::::::::
XP_016 MLFFCGDLLSRSQIFYYSTGMTVGIVASLL
10 20 30
210 220 230 240 250 260
pF1KSD IIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMS
40 50 60 70 80 90
270 280 290 300 310 320
pF1KSD FAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQW
100 110 120 130 140 150
330 340 350 360 370 380
pF1KSD LYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQ
160 170 180 190 200 210
390 400 410 420 430 440
pF1KSD SPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNN
220 230 240 250 260 270
pF1KSD FLT
:::
XP_016 FLT
>>XP_011536361 (OMIM: 616496) PREDICTED: nuclear envelop (273 aa)
initn: 1838 init1: 1838 opt: 1838 Z-score: 2237.5 bits: 422.5 E(85289): 6.8e-118
Smith-Waterman score: 1838; 100.0% identity (100.0% similar) in 273 aa overlap (172-444:1-273)
150 160 170 180 190 200
pF1KSD VEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLL
::::::::::::::::::::::::::::::
XP_011 MLFFCGDLLSRSQIFYYSTGMTVGIVASLL
10 20 30
210 220 230 240 250 260
pF1KSD IIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMS
40 50 60 70 80 90
270 280 290 300 310 320
pF1KSD FAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQW
100 110 120 130 140 150
330 340 350 360 370 380
pF1KSD LYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQ
160 170 180 190 200 210
390 400 410 420 430 440
pF1KSD SPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNN
220 230 240 250 260 270
pF1KSD FLT
:::
XP_011 FLT
>>NP_056072 (OMIM: 616496) nuclear envelope integral mem (371 aa)
initn: 1764 init1: 1764 opt: 1764 Z-score: 2145.6 bits: 405.9 E(85289): 9e-113
Smith-Waterman score: 2331; 83.6% identity (83.6% similar) in 444 aa overlap (1-444:1-371)
10 20 30 40 50 60
pF1KSD MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFL
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQ-----------
70 80 90 100
130 140 150 160 170 180
pF1KSD KEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLL
NP_056 ------------------------------------------------------------
190 200 210 220 230 240
pF1KSD SRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 --SQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQ
110 120 130 140 150 160
250 260 270 280 290 300
pF1KSD EIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPH
170 180 190 200 210 220
310 320 330 340 350 360
pF1KSD IALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALE
230 240 250 260 270 280
370 380 390 400 410 420
pF1KSD ELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIY
290 300 310 320 330 340
430 440
pF1KSD EEASSEEEDSYSRCPAITQNNFLT
::::::::::::::::::::::::
NP_056 EEASSEEEDSYSRCPAITQNNFLT
350 360 370
>>XP_011536360 (OMIM: 616496) PREDICTED: nuclear envelop (419 aa)
initn: 1764 init1: 1764 opt: 1764 Z-score: 2144.9 bits: 406.0 E(85289): 9.9e-113
Smith-Waterman score: 2054; 75.8% identity (77.6% similar) in 446 aa overlap (2-444:61-419)
10 20
pF1KSD MAGGMK---VAVSPAVGPGPWGSGVGGGGTV
::... . .: : :: : ..:
XP_011 NPPPSPPLVSPSPIWFALHSRPRLGGLLGEAGALRARPIDSKPQGKEGGWGPGKASG---
40 50 60 70 80
30 40 50 60 70 80
pF1KSD RLLLILSGCLVYGTAETDVNVVMLQESQVCEKRASQQFCYTNVLIPKWHDIWTRIQIRVN
.:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 -----------LATAETDVNVVMLQESQVCEKRASQQFCYTNVLIPKWHDIWTRIQIRVN
90 100 110 120 130
90 100 110 120 130 140
pF1KSD SSRLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKD
:::::::::::::::::::::
XP_011 SSRLVRVTQVENEEKLKELEQ---------------------------------------
140 150
150 160 170 180 190 200
pF1KSD TKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLLIIIFILS
::::::::::::::::::::::::::
XP_011 ----------------------------------SQIFYYSTGMTVGIVASLLIIIFILS
160 170 180
210 220 230 240 250 260
pF1KSD KFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMSFAVCYKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMSFAVCYKY
190 200 210 220 230 240
270 280 290 300 310 320
pF1KSD GPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQWLYITCRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQWLYITCRK
250 260 270 280 290 300
330 340 350 360 370 380
pF1KSD VCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQSPKRFAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQSPKRFAD
310 320 330 340 350 360
390 400 410 420 430 440
pF1KSD FVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNNFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNNFLT
370 380 390 400 410
>>XP_016874568 (OMIM: 616496) PREDICTED: nuclear envelop (253 aa)
initn: 1700 init1: 1700 opt: 1700 Z-score: 2070.2 bits: 391.4 E(85289): 1.4e-108
Smith-Waterman score: 1700; 100.0% identity (100.0% similar) in 253 aa overlap (192-444:1-253)
170 180 190 200 210 220
pF1KSD KLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVIL
::::::::::::::::::::::::::::::
XP_016 MTVGIVASLLIIIFILSKFMPKKSPIYVIL
10 20 30
230 240 250 260 270 280
pF1KSD VGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLT
40 50 60 70 80 90
290 300 310 320 330 340
pF1KSD WTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRL
100 110 120 130 140 150
350 360 370 380 390 400
pF1KSD LTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEV
160 170 180 190 200 210
410 420 430 440
pF1KSD SVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNNFLT
:::::::::::::::::::::::::::::::::::::::::::
XP_016 SVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNNFLT
220 230 240 250
>>XP_011536362 (OMIM: 616496) PREDICTED: nuclear envelop (269 aa)
initn: 1110 init1: 1110 opt: 1110 Z-score: 1352.2 bits: 258.7 E(85289): 1.4e-68
Smith-Waterman score: 1117; 83.7% identity (87.4% similar) in 215 aa overlap (2-213:61-261)
10 20
pF1KSD MAGGMK---VAVSPAVGPGPWGSGVGGGGTV
::... . .: : :: : ..:
XP_011 NPPPSPPLVSPSPIWFALHSRPRLGGLLGEAGALRARPIDSKPQGKEGGWGPGKASG---
40 50 60 70 80
30 40 50 60 70 80
pF1KSD RLLLILSGCLVYGTAETDVNVVMLQESQVCEKRASQQFCYTNVLIPKWHDIWTRIQIRVN
.:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 -----------LATAETDVNVVMLQESQVCEKRASQQFCYTNVLIPKWHDIWTRIQIRVN
90 100 110 120 130
90 100 110 120 130 140
pF1KSD SSRLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSRLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKD
140 150 160 170 180 190
150 160 170 180 190 200
pF1KSD TKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLLIIIFILS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLLIIIFILS
200 210 220 230 240 250
210 220 230 240 250 260
pF1KSD KFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMSFAVCYKY
:::::
XP_011 KFMPKVMSSQLDS
260
444 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:07:55 2016 done: Thu Nov 3 01:07:56 2016
Total Scan time: 9.010 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]