FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0286, 444 aa
  1>>>pF1KSDA0286 444 - 444 aa - 444 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4305+/-0.000811; mu= 17.2222+/- 0.049
 mean_var=70.3243+/-14.066, 0's: 0 Z-trim(107.8): 15  B-trim: 0 in 0/49
 Lambda= 0.152940
 statistics sampled from 9815 (9820) to 9815 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.302), width:  16
 Scan time:  2.780

The best scores are:                                      opt bits E(32554)
CCDS44927.1 NEMP1 gene_id:23306|Hs108|chr12        ( 444) 2964 663.0 1.6e-190
CCDS31841.1 NEMP1 gene_id:23306|Hs108|chr12        ( 371) 1764 398.2 7.1e-111
CCDS46476.1 NEMP2 gene_id:100131211|Hs108|chr2     ( 417)  884 204.1 2.2e-52


>>CCDS44927.1 NEMP1 gene_id:23306|Hs108|chr12             (444 aa)
 initn: 2964 init1: 2964 opt: 2964  Z-score: 3533.8  bits: 663.0 E(32554): 1.6e-190
Smith-Waterman score: 2964; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:1-444)

               10        20        30        40        50        60
pF1KSD MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD ELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIY
              370       380       390       400       410       420

              430       440    
pF1KSD EEASSEEEDSYSRCPAITQNNFLT
       ::::::::::::::::::::::::
CCDS44 EEASSEEEDSYSRCPAITQNNFLT
              430       440    

>>CCDS31841.1 NEMP1 gene_id:23306|Hs108|chr12             (371 aa)
 initn: 1764 init1: 1764 opt: 1764  Z-score: 2104.0  bits: 398.2 E(32554): 7.1e-111
Smith-Waterman score: 2331; 83.6% identity (83.6% similar) in 444 aa overlap (1-444:1-371)

               10        20        30        40        50        60
pF1KSD MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFL
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS31 RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQ-----------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KSD KEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLL
                                                                   
CCDS31 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KSD SRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQ
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 --SQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQ
       110       120       130       140       150       160       

              250       260       270       280       290       300
pF1KSD EIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPH
       170       180       190       200       210       220       

              310       320       330       340       350       360
pF1KSD IALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALE
       230       240       250       260       270       280       

              370       380       390       400       410       420
pF1KSD ELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIY
       290       300       310       320       330       340       

              430       440    
pF1KSD EEASSEEEDSYSRCPAITQNNFLT
       ::::::::::::::::::::::::
CCDS31 EEASSEEEDSYSRCPAITQNNFLT
       350       360       370 

>>CCDS46476.1 NEMP2 gene_id:100131211|Hs108|chr2          (417 aa)
 initn: 894 init1: 480 opt: 884  Z-score: 1053.9  bits: 204.1 E(32554): 2.2e-52
Smith-Waterman score: 884; 34.9% identity (72.4% similar) in 381 aa overlap (52-425:39-417)

              30        40        50        60        70        80 
pF1KSD VGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEKRASQQFCYTNVLIPKWHDIWT
                                     :.:... .   :. .::..    .:. ::.
CCDS46 WLLLWLPPLATLPVRGEAAAAALSVRRCKALKEKDLIRTSESDCYCYNQNSQVEWKYIWS
       10        20        30        40        50        60        

              90       100       110            120       130      
pF1KSD RIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSS-----FLKEKLNDTYVNVGLYST
        .:....:  : :.. . .... .  :  .: .:..      .. .. :.  . .. :  
CCDS46 TMQVKITSPGLFRIVYIAERHNCQYPE--NILSFIKCVIHNFWIPKESNEITIIINPYRE
       70        80        90         100       110       120      

        140       150        160       170       180       190     
pF1KSD KTCLKVEIIEKDTKYSVIVIRRF-DPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVG
        .:..:: ..:  .: . : : . : ::::::. :..::: .  ::.:  ::::.: ..:
CCDS46 TVCFSVEPVKKIFNYMIHVNRNIMDFKLFLVFVAGVFLFFYARTLSQSPTFYYSSGTVLG
        130       140       150       160       170       180      

         200       210       220       230       240       250     
pF1KSD IVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVL
       .. .:.........:.:: : .....:: :  :.:..  ....:. .:     :.:.:::
CCDS46 VLMTLVFVLLLVKRFIPKYSTFWALMVGCWFASVYIVCQLMEDLKWLWYENRIYVLGYVL
        190       200       210       220       230       240      

         260       270       280       290       300       310     
pF1KSD TVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNL
        :::.::.::::.::: ..:: .:: : :.:..: ..:.:. .:..: : ::. . . .:
CCDS46 IVGFFSFVVCYKHGPLADDRSRSLLMWMLRLLSLVLVYAGVAVPQFAYAAIILLMSSWSL
        250       260       270       280       290       300      

         320       330        340       350       360       370    
pF1KSD EHPIQWLYITCRKVCKG-AEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSAW
       ..:..       :. .  . : .  . :::.::: :...:: .::::::. : .::  .:
CCDS46 HYPLRACSYMRWKMEQWFTSKELVVKYLTEDEYREQADAETNSALEELRRACRKPDFPSW
        310       320       330       340       350       360      

          380       390       400       410       420       430    
pF1KSD KTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRC
        .:::...:..::::: :.:::.:.:.:.::..::::. . ...... ...         
CCDS46 LVVSRLHTPSKFADFVLGGSHLSPEEISLHEEQYGLGGAFLEEQLFNPSTA         
        370       380       390       400       410                

          440    
pF1KSD PAITQNNFLT




444 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:07:54 2016 done: Thu Nov  3 01:07:54 2016
 Total Scan time:  2.780 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]