Result of FASTA (omim) for
pF1KSDA0280
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0280, 244 aa
1>>>pF1KSDA0280 244 - 244 aa - 244 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.5807+/-0.000368; mu= -3.8456+/- 0.023
mean_var=245.4165+/-51.644, 0's: 0 Z-trim(121.4): 12 B-trim: 735 in 1/58
Lambda= 0.081870
statistics sampled from 38000 (38014) to 38000 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.446), width: 16
Scan time: 4.600
The best scores are: opt bits E(85289)
NP_001272979 (OMIM: 616316) protein FAM168A isofor ( 244) 1695 212.3 6.3e-55
NP_055974 (OMIM: 616316) protein FAM168A isoform 2 ( 235) 1341 170.5 2.4e-42
XP_016872904 (OMIM: 616316) PREDICTED: protein FAM ( 193) 992 129.2 5.2e-30
XP_016872905 (OMIM: 616316) PREDICTED: protein FAM ( 138) 725 97.5 1.2e-20
NP_001272980 (OMIM: 616316) protein FAM168A isofor ( 129) 366 55.1 6.8e-08
>>NP_001272979 (OMIM: 616316) protein FAM168A isoform 1 (244 aa)
initn: 1695 init1: 1695 opt: 1695 Z-score: 1107.1 bits: 212.3 E(85289): 6.3e-55
Smith-Waterman score: 1695; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
190 200 210 220 230 240
pF1KSD PPHW
::::
NP_001 PPHW
>>NP_055974 (OMIM: 616316) protein FAM168A isoform 2 [Ho (235 aa)
initn: 1275 init1: 1275 opt: 1341 Z-score: 881.4 bits: 170.5 E(85289): 2.4e-42
Smith-Waterman score: 1605; 96.3% identity (96.3% similar) in 244 aa overlap (1-244:1-235)
10 20 30 40 50 60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
:::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_055 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAP---------A
10 20 30 40 50
70 80 90 100 110 120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
180 190 200 210 220 230
pF1KSD PPHW
::::
NP_055 PPHW
>>XP_016872904 (OMIM: 616316) PREDICTED: protein FAM168A (193 aa)
initn: 1091 init1: 985 opt: 992 Z-score: 659.8 bits: 129.2 E(85289): 5.2e-30
Smith-Waterman score: 1231; 79.1% identity (79.1% similar) in 244 aa overlap (1-244:1-193)
10 20 30 40 50 60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAP----------
10 20 30 40 50
70 80 90 100 110 120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
: ::::::::::::::::::
XP_016 ---------------G--------------------------YTAGTPYKVPPTQSNTAP
60
130 140 150 160 170 180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
70 80 90 100 110 120
190 200 210 220 230 240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
130 140 150 160 170 180
pF1KSD PPHW
::::
XP_016 PPHW
190
>>XP_016872905 (OMIM: 616316) PREDICTED: protein FAM168A (138 aa)
initn: 710 init1: 710 opt: 725 Z-score: 491.4 bits: 97.5 E(85289): 1.2e-20
Smith-Waterman score: 739; 56.1% identity (56.6% similar) in 244 aa overlap (1-244:1-138)
10 20 30 40 50 60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
:::::::::::::::::::::::::::::::::::::::::
XP_016 TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAF-------------------
70 80 90 100
130 140 150 160 170 180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
XP_016 ------------------------------------------------------------
190 200 210 220 230 240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
.::::::::::::::::::::::::::::::::
XP_016 ---------------------------STLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
110 120 130
pF1KSD PPHW
::::
XP_016 PPHW
>>NP_001272980 (OMIM: 616316) protein FAM168A isoform 3 (129 aa)
initn: 610 init1: 366 opt: 366 Z-score: 262.7 bits: 55.1 E(85289): 6.8e-08
Smith-Waterman score: 649; 52.5% identity (52.9% similar) in 244 aa overlap (1-244:1-129)
10 20 30 40 50 60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
:::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_001 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAP---------A
10 20 30 40 50
70 80 90 100 110 120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
:::::::::::::::::::::::::::::::::::::::::
NP_001 TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAF-------------------
60 70 80 90
130 140 150 160 170 180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
NP_001 ------------------------------------------------------------
190 200 210 220 230 240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
.::::::::::::::::::::::::::::::::
NP_001 ---------------------------STLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
100 110 120
pF1KSD PPHW
::::
NP_001 PPHW
244 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:05:36 2016 done: Thu Nov 3 01:05:37 2016
Total Scan time: 4.600 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]