FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0280, 244 aa
  1>>>pF1KSDA0280 244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8778+/-0.000968; mu= 0.2315+/- 0.059
 mean_var=214.1377+/-44.324, 0's: 0 Z-trim(113.4): 16  B-trim: 369 in 1/52
 Lambda= 0.087645
 statistics sampled from 14047 (14060) to 14047 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.432), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS73346.1 FAM168A gene_id:23201|Hs108|chr11      ( 244) 1695 226.0 1.8e-59
CCDS41689.1 FAM168A gene_id:23201|Hs108|chr11      ( 235) 1341 181.3 5.1e-46
CCDS42755.1 FAM168B gene_id:130074|Hs108|chr2      ( 195)  724 103.2 1.3e-22


>>CCDS73346.1 FAM168A gene_id:23201|Hs108|chr11           (244 aa)
 initn: 1695 init1: 1695 opt: 1695  Z-score: 1181.3  bits: 226.0 E(32554): 1.8e-59
Smith-Waterman score: 1695; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
              190       200       210       220       230       240

           
pF1KSD PPHW
       ::::
CCDS73 PPHW
           

>>CCDS41689.1 FAM168A gene_id:23201|Hs108|chr11           (235 aa)
 initn: 1275 init1: 1275 opt: 1341  Z-score: 939.7  bits: 181.3 E(32554): 5.1e-46
Smith-Waterman score: 1605; 96.3% identity (96.3% similar) in 244 aa overlap (1-244:1-235)

               10        20        30        40        50        60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::         :
CCDS41 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAP---------A
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
             180       190       200       210       220       230 

           
pF1KSD PPHW
       ::::
CCDS41 PPHW
           

>>CCDS42755.1 FAM168B gene_id:130074|Hs108|chr2           (195 aa)
 initn: 955 init1: 510 opt: 724  Z-score: 519.2  bits: 103.2 E(32554): 1.3e-22
Smith-Waterman score: 809; 53.7% identity (68.7% similar) in 246 aa overlap (1-244:1-195)

               10        20         30        40        50         
pF1KSD MNPVYSPVQPGAPYGNPKNMAY-TGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAY
       ::::::: . :.::.: :...: .:.: .: ::::::.:..::  .:.    ::      
CCDS42 MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPT----FQ------
               10        20        30        40            50      

      60        70        80        90       100       110         
pF1KSD ATLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTA
                                  ::              :: ::::::  . .. :
CCDS42 ---------------------------TG--------------YTPGTPYKVSCSPTSGA
                                                        60         

     120       130       140        150       160       170        
pF1KSD PPPYSPSPNPYQTAMYPIRSAYPQQNLYAQ-GAYYTQPVYAAQPHVIHHTTVVQPNSIPS
        :::: ::::::::.::.:::::::. ::: :.:::::.::: :::::::::::::..:.
CCDS42 VPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPA
      70        80        90       100       110       120         

      180       190       200       210       220       230        
pF1KSD AIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYS
       ..::::.  :: :::.::::::::::::::::::. . : .. :::..::::: :::.::
CCDS42 TVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYS
     130       140       150       160       170       180         

      240    
pF1KSD YVPPHW
       ::::.:
CCDS42 YVPPQW
     190     




244 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:05:35 2016 done: Thu Nov  3 01:05:36 2016
 Total Scan time:  1.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]