FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0278, 396 aa
  1>>>pF1KSDA0278 396 - 396 aa - 396 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0016+/-0.000308; mu= 10.3767+/- 0.019
 mean_var=132.8704+/-26.828, 0's: 0 Z-trim(120.5): 1  B-trim: 0 in 0/55
 Lambda= 0.111265
 statistics sampled from 35869 (35870) to 35869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.421), width:  16
 Scan time:  7.940

The best scores are:                                      opt bits E(85289)
NP_056008 (OMIM: 612461) activity-regulated cytosk ( 396) 2743 451.3 1.9e-126


>>NP_056008 (OMIM: 612461) activity-regulated cytoskelet  (396 aa)
 initn: 2743 init1: 2743 opt: 2743  Z-score: 2391.1  bits: 451.3 E(85289): 1.9e-126
Smith-Waterman score: 2743; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KSD MELDHRTSGGLHAYPGPRGGQVAKPNVILQIGKCRAEMLEHVRRTHRHLLAEVSKQVERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MELDHRTSGGLHAYPGPRGGQVAKPNVILQIGKCRAEMLEHVRRTHRHLLAEVSKQVERE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LKGLHRSVGKLESNLDGYVPTSDSQRWKKSIKACLCRCQETIANLERWVKREMHVWREVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LKGLHRSVGKLESNLDGYVPTSDSQRWKKSIKACLCRCQETIANLERWVKREMHVWREVF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YRLERWADRLESTGGKYPVGSESARHTVSVGVGGPESYCHEADGYDYTVSPYAITPPPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 YRLERWADRLESTGGKYPVGSESARHTVSVGVGGPESYCHEADGYDYTVSPYAITPPPAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GELPGQEPAEAQQYQPWVPGEDGQPSPGVDTQIFEDPREFLSHLEEYLRQVGGSEEYWLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GELPGQEPAEAQQYQPWVPGEDGQPSPGVDTQIFEDPREFLSHLEEYLRQVGGSEEYWLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD QIQNHMNGPAKKWWEFKQGSVKNWVEFKKEFLQYSEGTLSREAIQRELDLPQKQGEPLDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QIQNHMNGPAKKWWEFKQGSVKNWVEFKKEFLQYSEGTLSREAIQRELDLPQKQGEPLDQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD FLWRKRDLYQTLYVDADEEEIIQYVVGTLQPKLKRFLRHPLPKTLEQLIQRGMEVQDDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 FLWRKRDLYQTLYVDADEEEIIQYVVGTLQPKLKRFLRHPLPKTLEQLIQRGMEVQDDLE
              310       320       330       340       350       360

              370       380       390      
pF1KSD QAAEPAGPHLPVEDEAETLTPAPNSESVASDRTQPE
       ::::::::::::::::::::::::::::::::::::
NP_056 QAAEPAGPHLPVEDEAETLTPAPNSESVASDRTQPE
              370       380       390      




396 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:04:59 2016 done: Thu Nov  3 01:05:00 2016
 Total Scan time:  7.940 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]