FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0278, 396 aa
  1>>>pF1KSDA0278 396 - 396 aa - 396 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2055+/-0.000767; mu= 9.3374+/- 0.046
 mean_var=127.6578+/-26.467, 0's: 0 Z-trim(113.2): 2  B-trim: 400 in 1/51
 Lambda= 0.113514
 statistics sampled from 13891 (13892) to 13891 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.427), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS34950.1 ARC gene_id:23237|Hs108|chr8           ( 396) 2743 459.9 1.8e-129


>>CCDS34950.1 ARC gene_id:23237|Hs108|chr8                (396 aa)
 initn: 2743 init1: 2743 opt: 2743  Z-score: 2438.0  bits: 459.9 E(32554): 1.8e-129
Smith-Waterman score: 2743; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KSD MELDHRTSGGLHAYPGPRGGQVAKPNVILQIGKCRAEMLEHVRRTHRHLLAEVSKQVERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MELDHRTSGGLHAYPGPRGGQVAKPNVILQIGKCRAEMLEHVRRTHRHLLAEVSKQVERE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LKGLHRSVGKLESNLDGYVPTSDSQRWKKSIKACLCRCQETIANLERWVKREMHVWREVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LKGLHRSVGKLESNLDGYVPTSDSQRWKKSIKACLCRCQETIANLERWVKREMHVWREVF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YRLERWADRLESTGGKYPVGSESARHTVSVGVGGPESYCHEADGYDYTVSPYAITPPPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YRLERWADRLESTGGKYPVGSESARHTVSVGVGGPESYCHEADGYDYTVSPYAITPPPAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GELPGQEPAEAQQYQPWVPGEDGQPSPGVDTQIFEDPREFLSHLEEYLRQVGGSEEYWLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GELPGQEPAEAQQYQPWVPGEDGQPSPGVDTQIFEDPREFLSHLEEYLRQVGGSEEYWLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD QIQNHMNGPAKKWWEFKQGSVKNWVEFKKEFLQYSEGTLSREAIQRELDLPQKQGEPLDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QIQNHMNGPAKKWWEFKQGSVKNWVEFKKEFLQYSEGTLSREAIQRELDLPQKQGEPLDQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD FLWRKRDLYQTLYVDADEEEIIQYVVGTLQPKLKRFLRHPLPKTLEQLIQRGMEVQDDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FLWRKRDLYQTLYVDADEEEIIQYVVGTLQPKLKRFLRHPLPKTLEQLIQRGMEVQDDLE
              310       320       330       340       350       360

              370       380       390      
pF1KSD QAAEPAGPHLPVEDEAETLTPAPNSESVASDRTQPE
       ::::::::::::::::::::::::::::::::::::
CCDS34 QAAEPAGPHLPVEDEAETLTPAPNSESVASDRTQPE
              370       380       390      




396 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:04:58 2016 done: Thu Nov  3 01:04:59 2016
 Total Scan time:  3.260 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]