Result of FASTA (ccds) for
pF1KSDA0276
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0276, 292 aa
1>>>pF1KSDA0276 292 - 292 aa - 292 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6451+/-0.000839; mu= 13.6237+/- 0.050
mean_var=70.4567+/-13.908, 0's: 0 Z-trim(106.9): 15 B-trim: 0 in 0/51
Lambda= 0.152796
statistics sampled from 9273 (9282) to 9273 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.285), width: 16
Scan time: 2.430
The best scores are: opt bits E(32554)
CCDS33982.1 DCUN1D4 gene_id:23142|Hs108|chr4 ( 292) 1995 448.7 2.3e-126
CCDS75123.1 DCUN1D4 gene_id:23142|Hs108|chr4 ( 336) 1940 436.6 1.2e-122
CCDS3487.2 DCUN1D4 gene_id:23142|Hs108|chr4 ( 257) 1390 315.3 2.9e-86
CCDS8325.1 DCUN1D5 gene_id:84259|Hs108|chr11 ( 237) 1135 259.1 2.3e-69
CCDS32013.1 DCUN1D2 gene_id:55208|Hs108|chr13 ( 259) 488 116.5 2.1e-26
CCDS77862.1 DCUN1D1 gene_id:54165|Hs108|chr3 ( 244) 466 111.6 5.7e-25
CCDS3240.1 DCUN1D1 gene_id:54165|Hs108|chr3 ( 259) 466 111.7 6e-25
CCDS10592.1 DCUN1D3 gene_id:123879|Hs108|chr16 ( 304) 396 96.3 3.1e-20
>>CCDS33982.1 DCUN1D4 gene_id:23142|Hs108|chr4 (292 aa)
initn: 1995 init1: 1995 opt: 1995 Z-score: 2382.1 bits: 448.7 E(32554): 2.3e-126
Smith-Waterman score: 1995; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KSD MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE
190 200 210 220 230 240
250 260 270 280 290
pF1KSD QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
250 260 270 280 290
>>CCDS75123.1 DCUN1D4 gene_id:23142|Hs108|chr4 (336 aa)
initn: 1940 init1: 1940 opt: 1940 Z-score: 2315.6 bits: 436.6 E(32554): 1.2e-122
Smith-Waterman score: 1940; 99.6% identity (100.0% similar) in 284 aa overlap (9-292:53-336)
10 20 30
pF1KSD MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDI
.:::::::::::::::::::::::::::::
CCDS75 GRGRERASERGTRVRISKGLSGAGGSVRKADFQLNSHLSTLANIHKIYHTLNKLNLTEDI
30 40 50 60 70 80
40 50 60 70 80 90
pF1KSD GQDDHQTGSLRSCSSSDCFNKVMPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GQDDHQTGSLRSCSSSDCFNKVMPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEE
90 100 110 120 130 140
100 110 120 130 140 150
pF1KSD EAFSSKRCLEWFYEYAGTDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EAFSSKRCLEWFYEYAGTDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTL
150 160 170 180 190 200
160 170 180 190 200 210
pF1KSD QEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAK
210 220 230 240 250 260
220 230 240 250 260 270
pF1KSD CMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVL
270 280 290 300 310 320
280 290
pF1KSD LDEFVEWYKDKQMS
::::::::::::::
CCDS75 LDEFVEWYKDKQMS
330
>>CCDS3487.2 DCUN1D4 gene_id:23142|Hs108|chr4 (257 aa)
initn: 1390 init1: 1390 opt: 1390 Z-score: 1662.2 bits: 315.3 E(32554): 2.9e-86
Smith-Waterman score: 1671; 88.0% identity (88.0% similar) in 292 aa overlap (1-292:1-257)
10 20 30 40 50 60
pF1KSD MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE
:::::::::::::::::::::::::
CCDS34 DYLRSFLNDSTNFKLIYRYAFDFAR-----------------------------------
190 200
250 260 270 280 290
pF1KSD QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
210 220 230 240 250
>>CCDS8325.1 DCUN1D5 gene_id:84259|Hs108|chr11 (237 aa)
initn: 1134 init1: 1109 opt: 1135 Z-score: 1359.0 bits: 259.1 E(32554): 2.3e-69
Smith-Waterman score: 1135; 70.0% identity (85.7% similar) in 237 aa overlap (61-292:1-237)
40 50 60 70 80
pF1KSD KLNLTEDIGQDDHQTGSLRSCSSSDCFNKVMPPRKKRR-P----ASGDDLSAKKSRHDSM
:: .:::. : : ..: . :: . .:.
CCDS83 MPVKKKRKSPGVAAAVAEDGGLKKCKISSY
10 20 30
90 100 110 120 130 140
pF1KSD YRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVVGPEGMEKFCEDIGVEPENVVMLVLA
:. .:. . :: ::::.:: ::::::: :.::::::::::::::::::::..:::::
CCDS83 CRSQPPARLISGEEHFSSKKCLAWFYEYAGPDEVVGPEGMEKFCEDIGVEPENIIMLVLA
40 50 60 70 80 90
150 160 170 180 190 200
pF1KSD WKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAR
:::.:..::.:: .:::::::::::: ::::.: .:.::: ::: ..:: ::::::::::
CCDS83 WKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQNKFDFLRSQLNDISSFKNIYRYAFDFAR
100 110 120 130 140 150
210 220 230 240 250 260
pF1KSD EKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLD
.::::::::.::: ::.::::. :::: ::.:.::::::.:.::::: ::::::::.. :
CCDS83 DKDQRSLDIDTAKSMLALLLGRTWPLFSVFYQYLEQSKYRVMNKDQWYNVLEFSRTVHAD
160 170 180 190 200 210
270 280 290
pF1KSD LSNYDEDGAWPVLLDEFVEWYKDKQMS
:::::::::::::::::::: : .: :
CCDS83 LSNYDEDGAWPVLLDEFVEWQKVRQTS
220 230
>>CCDS32013.1 DCUN1D2 gene_id:55208|Hs108|chr13 (259 aa)
initn: 454 init1: 436 opt: 488 Z-score: 587.6 bits: 116.5 E(32554): 2.1e-26
Smith-Waterman score: 488; 34.8% identity (71.5% similar) in 207 aa overlap (83-287:42-248)
60 70 80 90 100 110
pF1KSD SSDCFNKVMPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYE
::.... :: . .. ..: ..:. . . .
CCDS32 VRQFMACTQAGERTAIYCLTQNEWRLDEATDSFFQNPDSLHRESMRNAVDKKKLERLYGR
20 30 40 50 60 70
120 130 140 150 160 170
pF1KSD YAGTDDV--VGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQC
: .: .: .:...::.:....: .. .::.:::. : .. :. .:.: ::: : :
CCDS32 YKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEFLDGMTELGC
80 90 100 110 120 130
180 190 200 210 220 230
pF1KSD DTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWP
:. :::. : :.. :.:...:: .:...: ::.. :..::.. : . :.:. .
CCDS32 DSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFAKNPGQKGLDLEMAVAYWKLVLSGRFK
140 150 160 170 180 190
240 250 260 270 280 290
pF1KSD LFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQ
.. ... :: . . . : .: : .:.:. : :.:::::.::::::.:.:::. .
CCDS32 FLDLWNTFLMEHHKRSIPRDTWNLLLDFGNMIADDMSNYDEEGAWPVLIDDFVEYARPVV
200 210 220 230 240 250
pF1KSD MS
CCDS32 TGGKRSLF
>>CCDS77862.1 DCUN1D1 gene_id:54165|Hs108|chr3 (244 aa)
initn: 462 init1: 435 opt: 466 Z-score: 561.8 bits: 111.6 E(32554): 5.7e-25
Smith-Waterman score: 466; 35.4% identity (71.4% similar) in 189 aa overlap (104-289:47-235)
80 90 100 110 120 130
pF1KSD DLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYE-YAGTDDV--VGPEGMEKFCE
.. :: .:. : .: .: .:...::.
CCDS77 QNDWKLDVATDNFFQNPELYIRESVKGSLDRKKLEQLYNRYKDPQDENKIGIDGIQQFCD
20 30 40 50 60 70
140 150 160 170 180 190
pF1KSD DIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDS
:....: .. .:..:::. : .. :. ::.. ::: : ::. :::. . ... :..
CCDS77 DLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGCDSIEKLKAQIPKMEQELKEP
80 90 100 110 120 130
200 210 220 230 240 250
pF1KSD TNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKD
:: .:...:.::.. :..::.. : . .:.:. . .. ....:: . . . : ::
CCDS77 GRFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKFLDLWNKFLLEHHKRSIPKD
140 150 160 170 180 190
260 270 280 290
pF1KSD QWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
: .:.:: : :.:::::.::::::.:.:::. . .
CCDS77 TWNLLLDFSTMIADDMSNYDEEGAWPVLIDDFVEFARPQIAGTKSTTV
200 210 220 230 240
>>CCDS3240.1 DCUN1D1 gene_id:54165|Hs108|chr3 (259 aa)
initn: 462 init1: 435 opt: 466 Z-score: 561.4 bits: 111.7 E(32554): 6e-25
Smith-Waterman score: 466; 35.4% identity (71.4% similar) in 189 aa overlap (104-289:62-250)
80 90 100 110 120 130
pF1KSD DLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYE-YAGTDDV--VGPEGMEKFCE
.. :: .:. : .: .: .:...::.
CCDS32 QNDWKLDVATDNFFQNPELYIRESVKGSLDRKKLEQLYNRYKDPQDENKIGIDGIQQFCD
40 50 60 70 80 90
140 150 160 170 180 190
pF1KSD DIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDS
:....: .. .:..:::. : .. :. ::.. ::: : ::. :::. . ... :..
CCDS32 DLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGCDSIEKLKAQIPKMEQELKEP
100 110 120 130 140 150
200 210 220 230 240 250
pF1KSD TNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKD
:: .:...:.::.. :..::.. : . .:.:. . .. ....:: . . . : ::
CCDS32 GRFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKFLDLWNKFLLEHHKRSIPKD
160 170 180 190 200 210
260 270 280 290
pF1KSD QWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
: .:.:: : :.:::::.::::::.:.:::. . .
CCDS32 TWNLLLDFSTMIADDMSNYDEEGAWPVLIDDFVEFARPQIAGTKSTTV
220 230 240 250
>>CCDS10592.1 DCUN1D3 gene_id:123879|Hs108|chr16 (304 aa)
initn: 332 init1: 200 opt: 396 Z-score: 476.9 bits: 96.3 E(32554): 3.1e-20
Smith-Waterman score: 396; 35.3% identity (63.2% similar) in 204 aa overlap (95-290:80-281)
70 80 90 100 110 120
pF1KSD KKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGT-DDVVGPE
:.. : : .: : : .: .:.. :
CCDS10 DILVNGTKKAEAATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KSD GMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYL
:::.::.:. :.: . .:.::::..: .: :: .:.. : ... :. . . . :
CCDS10 GMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KSD RSFLNDSTNFKLIYRYAFDFA--REKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE-
. .. .:: .::..:.:. :. :::: . : . :.. . : ::. :.:.
CCDS10 LTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNP--PVLDQWLNF
170 180 190 200 210 220
250 260 270 280 290
pF1KSD ----QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
: : :..: : :.:...:. :::::.:: ::: :.: :::: ...
CCDS10 LTENPSGIKGISRDTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEG
230 240 250 260 270 280
CCDS10 RGALSSGPEGLCPEEQT
290 300
292 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:03:44 2016 done: Thu Nov 3 01:03:44 2016
Total Scan time: 2.430 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]