Result of FASTA (omim) for
pF1KSDA0272
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0272, 729 aa
1>>>pF1KSDA0272 729 - 729 aa - 729 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.0533+/-0.000387; mu= 3.0964+/- 0.024
mean_var=189.5538+/-38.466, 0's: 0 Z-trim(119.4): 55 B-trim: 496 in 1/53
Lambda= 0.093155
statistics sampled from 33348 (33404) to 33348 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.392), width: 16
Scan time: 9.720
The best scores are: opt bits E(85289)
NP_004647 (OMIM: 603089,614327) ubiquitin carboxyl ( 729) 4825 661.2 4.1e-189
XP_011532452 (OMIM: 603089,614327) PREDICTED: ubiq ( 737) 4683 642.1 2.3e-183
XP_011532451 (OMIM: 603089,614327) PREDICTED: ubiq ( 752) 4176 574.0 7.5e-163
XP_011532454 (OMIM: 603089,614327) PREDICTED: ubiq ( 714) 4078 560.8 6.6e-159
XP_016862792 (OMIM: 603089,614327) PREDICTED: ubiq ( 711) 3205 443.5 1.4e-123
XP_011532453 (OMIM: 603089,614327) PREDICTED: ubiq ( 734) 2556 356.3 2.6e-97
NP_001186192 (OMIM: 610667) ubiquitin carboxyl-ter ( 316) 583 90.9 8.3e-18
NP_001186191 (OMIM: 610667) ubiquitin carboxyl-ter ( 326) 583 90.9 8.5e-18
NP_001186190 (OMIM: 610667) ubiquitin carboxyl-ter ( 328) 583 90.9 8.6e-18
XP_005245303 (OMIM: 610667) PREDICTED: ubiquitin c ( 393) 583 91.0 1e-17
NP_057068 (OMIM: 610667) ubiquitin carboxyl-termin ( 329) 572 89.5 2.4e-17
XP_016856922 (OMIM: 610667) PREDICTED: ubiquitin c ( 384) 572 89.5 2.7e-17
XP_016856920 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 572 89.5 2.8e-17
XP_016856921 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 572 89.5 2.8e-17
XP_016856924 (OMIM: 610667) PREDICTED: ubiquitin c ( 348) 510 81.1 8.1e-15
XP_005245305 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 503 80.2 1.4e-14
XP_005245304 (OMIM: 610667) PREDICTED: ubiquitin c ( 320) 492 78.7 4e-14
XP_006711432 (OMIM: 610667) PREDICTED: ubiquitin c ( 410) 493 78.9 4.5e-14
XP_016856919 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 493 78.9 4.6e-14
XP_016856918 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 493 78.9 4.6e-14
XP_005245301 (OMIM: 610667) PREDICTED: ubiquitin c ( 422) 493 78.9 4.6e-14
XP_006711431 (OMIM: 610667) PREDICTED: ubiquitin c ( 411) 491 78.6 5.5e-14
XP_006711430 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 491 78.6 5.6e-14
XP_011507906 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 491 78.6 5.6e-14
XP_006711429 (OMIM: 610667) PREDICTED: ubiquitin c ( 423) 491 78.6 5.6e-14
XP_016856926 (OMIM: 610667) PREDICTED: ubiquitin c ( 291) 457 74.0 9.7e-13
XP_016856925 (OMIM: 610667) PREDICTED: ubiquitin c ( 292) 446 72.5 2.7e-12
XP_016856923 (OMIM: 610667) PREDICTED: ubiquitin c ( 375) 420 69.1 3.8e-11
XP_006711433 (OMIM: 610667) PREDICTED: ubiquitin c ( 376) 418 68.8 4.6e-11
XP_011507909 (OMIM: 610667) PREDICTED: ubiquitin c ( 347) 411 67.8 8.2e-11
XP_011507911 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 365 61.6 5.5e-09
XP_011507910 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 365 61.6 5.5e-09
XP_016856933 (OMIM: 610667) PREDICTED: ubiquitin c ( 192) 319 55.3 2.6e-07
XP_016856931 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 319 55.4 2.8e-07
XP_016856930 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 319 55.4 2.8e-07
XP_016856932 (OMIM: 610667) PREDICTED: ubiquitin c ( 203) 308 53.9 7.7e-07
XP_016856929 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 308 53.9 7.7e-07
XP_005245306 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 308 53.9 7.7e-07
NP_005993 (OMIM: 603090) ubiquitin carboxyl-termin ( 230) 243 45.2 0.00036
XP_016856928 (OMIM: 610667) PREDICTED: ubiquitin c ( 231) 229 43.3 0.0013
XP_016876216 (OMIM: 603090) PREDICTED: ubiquitin c ( 226) 228 43.1 0.0014
XP_016856927 (OMIM: 610667) PREDICTED: ubiquitin c ( 232) 227 43.0 0.0016
XP_006711434 (OMIM: 610667) PREDICTED: ubiquitin c ( 232) 227 43.0 0.0016
NP_001257881 (OMIM: 603090) ubiquitin carboxyl-ter ( 194) 209 40.6 0.0075
>>NP_004647 (OMIM: 603089,614327) ubiquitin carboxyl-ter (729 aa)
initn: 4825 init1: 4825 opt: 4825 Z-score: 3516.3 bits: 661.2 E(85289): 4.1e-189
Smith-Waterman score: 4825; 100.0% identity (100.0% similar) in 729 aa overlap (1-729:1-729)
10 20 30 40 50 60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
670 680 690 700 710 720
pF1KSD SRPYKAKRQ
:::::::::
NP_004 SRPYKAKRQ
>>XP_011532452 (OMIM: 603089,614327) PREDICTED: ubiquiti (737 aa)
initn: 4709 init1: 4072 opt: 4683 Z-score: 3413.0 bits: 642.1 E(85289): 2.3e-183
Smith-Waterman score: 4688; 96.9% identity (97.7% similar) in 739 aa overlap (1-729:1-737)
10 20 30 40 50 60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
550 560 570 580 590 600
610 620 630 640 650
pF1KSD KEVVEATDSREKTGMV----------RPGEPLSGEKYSPKELLALLKCVEAEIANYEACL
:::::::::::::::. :: . .. . .::::::::::::::::::::
XP_011 KEVVEATDSREKTGMLPIARGALLLARPDQRCNAGFW--QELLALLKCVEAEIANYEACL
610 620 630 640 650
660 670 680 690 700 710
pF1KSD KEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLH
660 670 680 690 700 710
720
pF1KSD KQRKPDRRKRSRPYKAKRQ
:::::::::::::::::::
XP_011 KQRKPDRRKRSRPYKAKRQ
720 730
>>XP_011532451 (OMIM: 603089,614327) PREDICTED: ubiquiti (752 aa)
initn: 4176 init1: 4176 opt: 4176 Z-score: 3044.7 bits: 574.0 E(85289): 7.5e-163
Smith-Waterman score: 4769; 96.9% identity (96.9% similar) in 752 aa overlap (1-729:1-752)
10 20 30 40 50 60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
550 560 570 580 590 600
610 620 630
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPK-----------------------ELLALLK
:::::::::::::::::::::::::::::: :::::::
XP_011 KEVVEATDSREKTGMVRPGEPLSGEKYSPKLPIARGALLLARPDQRCNAGFWQELLALLK
610 620 630 640 650 660
640 650 660 670 680 690
pF1KSD CVEAEIANYEACLKEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CVEAEIANYEACLKEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNIS
670 680 690 700 710 720
700 710 720
pF1KSD VRRRQGVSIGRLHKQRKPDRRKRSRPYKAKRQ
::::::::::::::::::::::::::::::::
XP_011 VRRRQGVSIGRLHKQRKPDRRKRSRPYKAKRQ
730 740 750
>>XP_011532454 (OMIM: 603089,614327) PREDICTED: ubiquiti (714 aa)
initn: 4706 init1: 4071 opt: 4078 Z-score: 2973.8 bits: 560.8 E(85289): 6.6e-159
Smith-Waterman score: 4680; 97.9% identity (97.9% similar) in 729 aa overlap (1-729:1-714)
10 20 30 40 50 60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
::::::::::::::: ::::::::::::::::::::::::::::::
XP_011 KEVVEATDSREKTGM---------------ELLALLKCVEAEIANYEACLKEEVEKRKKF
610 620 630 640
670 680 690 700 710 720
pF1KSD KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
650 660 670 680 690 700
pF1KSD SRPYKAKRQ
:::::::::
XP_011 SRPYKAKRQ
710
>>XP_016862792 (OMIM: 603089,614327) PREDICTED: ubiquiti (711 aa)
initn: 3205 init1: 3205 opt: 3205 Z-score: 2339.8 bits: 443.5 E(85289): 1.4e-123
Smith-Waterman score: 4651; 97.5% identity (97.5% similar) in 729 aa overlap (1-729:1-711)
10 20 30 40 50 60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
:::::::::::::::::::::::::::::::::::::::: ::
XP_016 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAG------------------IK
190 200 210 220
250 260 270 280 290 300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
230 240 250 260 270 280
310 320 330 340 350 360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
290 300 310 320 330 340
370 380 390 400 410 420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
350 360 370 380 390 400
430 440 450 460 470 480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
410 420 430 440 450 460
490 500 510 520 530 540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
470 480 490 500 510 520
550 560 570 580 590 600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
530 540 550 560 570 580
610 620 630 640 650 660
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
590 600 610 620 630 640
670 680 690 700 710 720
pF1KSD KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
650 660 670 680 690 700
pF1KSD SRPYKAKRQ
:::::::::
XP_016 SRPYKAKRQ
710
>>XP_011532453 (OMIM: 603089,614327) PREDICTED: ubiquiti (734 aa)
initn: 2556 init1: 2556 opt: 2556 Z-score: 1868.2 bits: 356.3 E(85289): 2.6e-97
Smith-Waterman score: 4595; 94.5% identity (94.5% similar) in 752 aa overlap (1-729:1-734)
10 20 30 40 50 60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
:::::::::::::::::::::::::::::::::::::::: ::
XP_011 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAG------------------IK
190 200 210 220
250 260 270 280 290 300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
230 240 250 260 270 280
310 320 330 340 350 360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
290 300 310 320 330 340
370 380 390 400 410 420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
350 360 370 380 390 400
430 440 450 460 470 480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
410 420 430 440 450 460
490 500 510 520 530 540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
470 480 490 500 510 520
550 560 570 580 590 600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
530 540 550 560 570 580
610 620 630
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPK-----------------------ELLALLK
:::::::::::::::::::::::::::::: :::::::
XP_011 KEVVEATDSREKTGMVRPGEPLSGEKYSPKLPIARGALLLARPDQRCNAGFWQELLALLK
590 600 610 620 630 640
640 650 660 670 680 690
pF1KSD CVEAEIANYEACLKEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CVEAEIANYEACLKEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNIS
650 660 670 680 690 700
700 710 720
pF1KSD VRRRQGVSIGRLHKQRKPDRRKRSRPYKAKRQ
::::::::::::::::::::::::::::::::
XP_011 VRRRQGVSIGRLHKQRKPDRRKRSRPYKAKRQ
710 720 730
>>NP_001186192 (OMIM: 610667) ubiquitin carboxyl-termina (316 aa)
initn: 725 init1: 149 opt: 583 Z-score: 440.7 bits: 90.9 E(85289): 8.3e-18
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)
10 20 30 40 50
pF1KSD MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
: : : .:::::.:: :.. :: .:.:::::..:. . ::.:.::::::
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
.. ::..:. ....:::.:.: :.:::.:..::::::. : :: ::
NP_001 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
70 80 90 100 110
120 130 140 150 160 170
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
:..:.:...:. :: :..:. . ..::: :: . .. : .... .::::::
NP_001 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
120 130 140 150 160
180 190 200 210 220 230
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
:::..:::.:::::. ::: : ..:. : . .: :: .:: . :: :::::::
NP_001 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
.: ::.. :: . . ...:: . : .. .. ::.. .....: ::
NP_001 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
230 240 250 260 270 280
300 310 320 330 340 350
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
NP_001 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKGK
290 300 310
>>NP_001186191 (OMIM: 610667) ubiquitin carboxyl-termina (326 aa)
initn: 725 init1: 149 opt: 583 Z-score: 440.5 bits: 90.9 E(85289): 8.5e-18
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)
10 20 30 40 50
pF1KSD MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
: : : .:::::.:: :.. :: .:.:::::..:. . ::.:.::::::
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
.. ::..:. ....:::.:.: :.:::.:..::::::. : :: ::
NP_001 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
70 80 90 100 110
120 130 140 150 160 170
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
:..:.:...:. :: :..:. . ..::: :: . .. : .... .::::::
NP_001 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
120 130 140 150 160
180 190 200 210 220 230
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
:::..:::.:::::. ::: : ..:. : . .: :: .:: . :: :::::::
NP_001 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
.: ::.. :: . . ...:: . : .. .. ::.. .....: ::
NP_001 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
230 240 250 260 270 280
300 310 320 330 340 350
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
NP_001 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKFEKHFEKTLLGK
290 300 310 320
>>NP_001186190 (OMIM: 610667) ubiquitin carboxyl-termina (328 aa)
initn: 725 init1: 149 opt: 583 Z-score: 440.4 bits: 90.9 E(85289): 8.6e-18
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)
10 20 30 40 50
pF1KSD MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
: : : .:::::.:: :.. :: .:.:::::..:. . ::.:.::::::
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
.. ::..:. ....:::.:.: :.:::.:..::::::. : :: ::
NP_001 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
70 80 90 100 110
120 130 140 150 160 170
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
:..:.:...:. :: :..:. . ..::: :: . .. : .... .::::::
NP_001 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
120 130 140 150 160
180 190 200 210 220 230
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
:::..:::.:::::. ::: : ..:. : . .: :: .:: . :: :::::::
NP_001 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
.: ::.. :: . . ...:: . : .. .. ::.. .....: ::
NP_001 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
230 240 250 260 270 280
300 310 320 330 340 350
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
NP_001 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
290 300 310 320
>>XP_005245303 (OMIM: 610667) PREDICTED: ubiquitin carbo (393 aa)
initn: 750 init1: 149 opt: 583 Z-score: 439.2 bits: 91.0 E(85289): 1e-17
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:71-339)
10 20 30
pF1KSD MNKG-WLELESDPGLFTLLVEDFGVKGVQVE
: : : .:::::.:: :.. :: .:.:::
XP_005 LRSVAGGSWCGGQLRARGGSGRCVARAMTGNAGEWCLMESDPGVFTELIKGFGCRGAQVE
50 60 70 80 90 100
40 50 60 70 80
pF1KSD EIYDLQSKC---QGPVYGFIFLFKWIEERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLI
::..:. . ::.:.:::::: .. ::..:. ....:::.:.:
XP_005 EIWSLEPENFEKLKPVHGLIFLFKWQPGEEPA---------GSVVQDSRLDTIFFAKQVI
110 120 130 140 150
90 100 110 120 130 140
pF1KSD PNSCATHALLSVLLNCSSVD--LGPTLSRMKDFTKGFSPESKGYAIGNAPELAKAHNSHA
:.:::.:..::::::. : :: :::..:.:...:. :: :..:. . ..::: :
XP_005 NNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFA
160 170 180 190 200 210
150 160 170 180 190 200
pF1KSD RPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRLFELDGLKVYPIDHGPWGEDEEWTDK
: . .. : .... .:::::::::..:::.:::::. ::: : ..:. : .
XP_005 RQQMFEFDTK----TSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDD-WISA
220 230 240 250 260
210 220 230 240 250 260
pF1KSD ARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIKYEARLHVLKVNRQTVLEALQQLIRV
.: :: .:: . :: :::::::.: ::.. :: . . ...:: . : ..
XP_005 VRPVIEKRIQKYSEGE----IRFNLMAIVSDRKMIYEQK--IAELQRQLAEEPMDTDQGN
270 280 290 300 310 320
270 280 290 300 310 320
pF1KSD TQPELIQTHKSQESQLPEESKSASNKSPLVLEANRAPAASEGNHTDGAEEAAGSCAQAPS
.. ::.. .....: ::
XP_005 SMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVE
330 340 350 360 370 380
729 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:01:20 2016 done: Thu Nov 3 01:01:21 2016
Total Scan time: 9.720 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]