Result of FASTA (ccds) for
pF1KSDA0272
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0272, 729 aa
1>>>pF1KSDA0272 729 - 729 aa - 729 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5315+/-0.000924; mu= 6.0770+/- 0.056
mean_var=169.2065+/-34.088, 0's: 0 Z-trim(111.6): 23 B-trim: 0 in 0/52
Lambda= 0.098597
statistics sampled from 12514 (12527) to 12514 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.385), width: 16
Scan time: 3.550
The best scores are: opt bits E(32554)
CCDS2853.1 BAP1 gene_id:8314|Hs108|chr3 ( 729) 4825 698.7 8.1e-201
CCDS55669.1 UCHL5 gene_id:51377|Hs108|chr1 ( 316) 583 95.1 1.8e-19
CCDS55670.1 UCHL5 gene_id:51377|Hs108|chr1 ( 326) 583 95.1 1.8e-19
CCDS55668.1 UCHL5 gene_id:51377|Hs108|chr1 ( 328) 583 95.1 1.8e-19
CCDS1378.1 UCHL5 gene_id:51377|Hs108|chr1 ( 329) 572 93.5 5.4e-19
>>CCDS2853.1 BAP1 gene_id:8314|Hs108|chr3 (729 aa)
initn: 4825 init1: 4825 opt: 4825 Z-score: 3718.8 bits: 698.7 E(32554): 8.1e-201
Smith-Waterman score: 4825; 100.0% identity (100.0% similar) in 729 aa overlap (1-729:1-729)
10 20 30 40 50 60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
670 680 690 700 710 720
pF1KSD SRPYKAKRQ
:::::::::
CCDS28 SRPYKAKRQ
>>CCDS55669.1 UCHL5 gene_id:51377|Hs108|chr1 (316 aa)
initn: 725 init1: 149 opt: 583 Z-score: 463.2 bits: 95.1 E(32554): 1.8e-19
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)
10 20 30 40 50
pF1KSD MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
: : : .:::::.:: :.. :: .:.:::::..:. . ::.:.::::::
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
.. ::..:. ....:::.:.: :.:::.:..::::::. : :: ::
CCDS55 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
70 80 90 100 110
120 130 140 150 160 170
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
:..:.:...:. :: :..:. . ..::: :: . .. : .... .::::::
CCDS55 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
120 130 140 150 160
180 190 200 210 220 230
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
:::..:::.:::::. ::: : ..:. : . .: :: .:: . :: :::::::
CCDS55 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
.: ::.. :: . . ...:: . : .. .. ::.. .....: ::
CCDS55 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
230 240 250 260 270 280
300 310 320 330 340 350
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
CCDS55 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKGK
290 300 310
>>CCDS55670.1 UCHL5 gene_id:51377|Hs108|chr1 (326 aa)
initn: 725 init1: 149 opt: 583 Z-score: 463.0 bits: 95.1 E(32554): 1.8e-19
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)
10 20 30 40 50
pF1KSD MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
: : : .:::::.:: :.. :: .:.:::::..:. . ::.:.::::::
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
.. ::..:. ....:::.:.: :.:::.:..::::::. : :: ::
CCDS55 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
70 80 90 100 110
120 130 140 150 160 170
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
:..:.:...:. :: :..:. . ..::: :: . .. : .... .::::::
CCDS55 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
120 130 140 150 160
180 190 200 210 220 230
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
:::..:::.:::::. ::: : ..:. : . .: :: .:: . :: :::::::
CCDS55 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
.: ::.. :: . . ...:: . : .. .. ::.. .....: ::
CCDS55 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
230 240 250 260 270 280
300 310 320 330 340 350
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
CCDS55 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKFEKHFEKTLLGK
290 300 310 320
>>CCDS55668.1 UCHL5 gene_id:51377|Hs108|chr1 (328 aa)
initn: 725 init1: 149 opt: 583 Z-score: 463.0 bits: 95.1 E(32554): 1.8e-19
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)
10 20 30 40 50
pF1KSD MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
: : : .:::::.:: :.. :: .:.:::::..:. . ::.:.::::::
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
.. ::..:. ....:::.:.: :.:::.:..::::::. : :: ::
CCDS55 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
70 80 90 100 110
120 130 140 150 160 170
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
:..:.:...:. :: :..:. . ..::: :: . .. : .... .::::::
CCDS55 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
120 130 140 150 160
180 190 200 210 220 230
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
:::..:::.:::::. ::: : ..:. : . .: :: .:: . :: :::::::
CCDS55 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
.: ::.. :: . . ...:: . : .. .. ::.. .....: ::
CCDS55 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
230 240 250 260 270 280
300 310 320 330 340 350
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
CCDS55 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
290 300 310 320
>>CCDS1378.1 UCHL5 gene_id:51377|Hs108|chr1 (329 aa)
initn: 725 init1: 149 opt: 572 Z-score: 454.5 bits: 93.5 E(32554): 5.4e-19
Smith-Waterman score: 633; 43.1% identity (68.7% similar) in 262 aa overlap (2-257:4-245)
10 20 30 40 50
pF1KSD MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
: : : .:::::.:: :.. :: .:.:::::..:. . ::.:.::::::
CCDS13 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
.. ::..:. ....:::.:.: :.:::.:..::::::. : :: ::
CCDS13 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
70 80 90 100 110
120 130 140 150 160 170
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
:..:.:...:. :: :..:. . ..::: :: . .. : .... .::::::
CCDS13 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
120 130 140 150 160
180 190 200 210 220 230
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
:::..:::.:::::. ::: : ..:. : . .: :: .:: . :: :::::::
CCDS13 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
.: ::.. :: .. :. :: . :
CCDS13 IVSDRKMIYEQKIAELQ--RQLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKR
230 240 250 260 270 280
729 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:01:19 2016 done: Thu Nov 3 01:01:19 2016
Total Scan time: 3.550 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]