FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KSDA0264, 414 aa 1>>>pF1KSDA0264 414 - 414 aa - 414 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9176+/-0.00106; mu= 9.3979+/- 0.063 mean_var=102.1608+/-19.981, 0's: 0 Z-trim(106.1): 27 B-trim: 11 in 1/49 Lambda= 0.126891 statistics sampled from 8800 (8810) to 8800 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.271), width: 16 Scan time: 2.780 The best scores are: opt bits E(32554) CCDS4013.1 MRPS27 gene_id:23107|Hs108|chr5 ( 414) 2689 503.0 2.1e-142 CCDS75257.1 MRPS27 gene_id:23107|Hs108|chr5 ( 358) 2326 436.5 1.9e-122 CCDS68890.1 MRPS27 gene_id:23107|Hs108|chr5 ( 428) 2091 393.5 2e-109 >>CCDS4013.1 MRPS27 gene_id:23107|Hs108|chr5 (414 aa) initn: 2689 init1: 2689 opt: 2689 Z-score: 2670.1 bits: 503.0 E(32554): 2.1e-142 Smith-Waterman score: 2689; 99.8% identity (99.8% similar) in 414 aa overlap (1-414:1-414) 10 20 30 40 50 60 pF1KSD MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KSD FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KSD AQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 AQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KSD LSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 LSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KSD RAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLDAVLKALTSADGASEEQ ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: CCDS40 RAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAVLKALTSADGASEEQ 250 260 270 280 290 300 310 320 330 340 350 360 pF1KSD SQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 SQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLV 310 320 330 340 350 360 370 380 390 400 410 pF1KSD KEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAAKASA :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 KEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAAKASA 370 380 390 400 410 >>CCDS75257.1 MRPS27 gene_id:23107|Hs108|chr5 (358 aa) initn: 2326 init1: 2326 opt: 2326 Z-score: 2311.9 bits: 436.5 E(32554): 1.9e-122 Smith-Waterman score: 2326; 99.7% identity (99.7% similar) in 358 aa overlap (57-414:1-358) 30 40 50 60 70 80 pF1KSD RYLLSSAYVDSHKWEAREKEHYCLADLASLMDKTFERKLPVSSLTISRLIDNISSREEID :::::::::::::::::::::::::::::: CCDS75 MDKTFERKLPVSSLTISRLIDNISSREEID 10 20 30 90 100 110 120 130 140 pF1KSD HAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 HAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNL 40 50 60 70 80 90 150 160 170 180 190 200 pF1KSD LMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 LMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGA 100 110 120 130 140 150 210 220 230 240 250 260 pF1KSD SLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 SLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKV 160 170 180 190 200 210 270 280 290 300 310 320 pF1KSD AASPEDIKLCREALDVLDAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSK ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: CCDS75 AASPEDIKLCREALDVLGAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSK 220 230 240 250 260 270 330 340 350 360 370 380 pF1KSD LPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 LPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDL 280 290 300 310 320 330 390 400 410 pF1KSD VQLIQREQQQREQAKQEYQAQKAAKASA :::::::::::::::::::::::::::: CCDS75 VQLIQREQQQREQAKQEYQAQKAAKASA 340 350 >>CCDS68890.1 MRPS27 gene_id:23107|Hs108|chr5 (428 aa) initn: 2091 init1: 2091 opt: 2091 Z-score: 2078.2 bits: 393.5 E(32554): 2e-109 Smith-Waterman score: 2651; 96.5% identity (96.5% similar) in 428 aa overlap (1-414:1-428) 10 20 30 40 50 60 pF1KSD MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT 10 20 30 40 50 60 70 80 90 100 pF1KSD FERKLPVSSLTISRLIDNISSREEIDHAEYYLYK--------------FRHSPNCWYLRN :::::::::::::::::::::::::::::::::: :::::::::::: CCDS68 FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKKGECSSSNPQNYSRFRHSPNCWYLRN 70 80 90 100 110 120 110 120 130 140 150 160 pF1KSD WTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 WTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFE 130 140 150 160 170 180 170 180 190 200 210 220 pF1KSD VMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 VMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLY 190 200 210 220 230 240 230 240 250 260 270 280 pF1KSD GYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLDAV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: CCDS68 GYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAV 250 260 270 280 290 300 290 300 310 320 330 340 pF1KSD LKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 LKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGK 310 320 330 340 350 360 350 360 370 380 390 400 pF1KSD IESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 IESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQA 370 380 390 400 410 420 410 pF1KSD QKAAKASA :::::::: CCDS68 QKAAKASA 414 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 00:59:16 2016 done: Thu Nov 3 00:59:17 2016 Total Scan time: 2.780 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]