Result of FASTA (ccds) for
pF1KSDA0250
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0250, 1091 aa
1>>>pF1KSDA0250 1091 - 1091 aa - 1091 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.3056+/-0.00132; mu= -14.7383+/- 0.079
mean_var=417.2243+/-87.223, 0's: 0 Z-trim(112.7): 40 B-trim: 374 in 1/50
Lambda= 0.062790
statistics sampled from 13415 (13440) to 13415 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.413), width: 16
Scan time: 4.690
The best scores are: opt bits E(32554)
CCDS53444.1 SMG7 gene_id:9887|Hs108|chr1 (1091) 7384 684.1 4.5e-196
CCDS41445.2 SMG7 gene_id:9887|Hs108|chr1 (1178) 5879 547.8 5.3e-155
CCDS81410.1 SMG7 gene_id:9887|Hs108|chr1 (1170) 5828 543.2 1.3e-153
CCDS1355.1 SMG7 gene_id:9887|Hs108|chr1 (1137) 3785 358.1 6.5e-98
CCDS53445.1 SMG7 gene_id:9887|Hs108|chr1 (1145) 3520 334.1 1.1e-90
>>CCDS53444.1 SMG7 gene_id:9887|Hs108|chr1 (1091 aa)
initn: 7384 init1: 7384 opt: 7384 Z-score: 3633.5 bits: 684.1 E(32554): 4.5e-196
Smith-Waterman score: 7384; 99.9% identity (100.0% similar) in 1091 aa overlap (1-1091:1-1091)
10 20 30 40 50 60
pF1KSD MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD NLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GKLLFITEIPELILEDPSEAKENLILQETSVIESLAADGSPGLKSVLSTSRNLSNNCDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GKLLFITEIPELILEDPSEAKENLILQETSVIESLAADGSPGLKSVLSTSRNLSNNCDTG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD EKPVVTFKENIKTREVNRDQGRSFPPKEVKSQTELRKTPVSEARKTPVTQTPTQASNSQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EKPVVTFKENIKTREVNRDQGRSFPPKEVKSQTELRKTPVSEARKTPVTQTPTQASNSQF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD IPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD QVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQSTSQLQVQALTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQSTSQLQVQALTQ
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD QQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQD
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD PIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRSVMAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRSVMAQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD QANIDRRGKRSPGIFRPEQDPVPRMPFEKSLLEKPSELMSHSSSFLSLTGFSLNQERYPN
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QANIDRRGKRSPGVFRPEQDPVPRMPFEKSLLEKPSELMSHSSSFLSLTGFSLNQERYPN
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NSMFNEVYGKNLTSSSKAELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NSMFNEVYGKNLTSSSKAELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD SNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSATSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSATSS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD SESSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SESSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQ
1030 1040 1050 1060 1070 1080
1090
pF1KSD QRGQGTMNPPH
:::::::::::
CCDS53 QRGQGTMNPPH
1090
>>CCDS41445.2 SMG7 gene_id:9887|Hs108|chr1 (1178 aa)
initn: 7107 init1: 5867 opt: 5879 Z-score: 2896.2 bits: 547.8 E(32554): 5.3e-155
Smith-Waterman score: 7013; 94.5% identity (95.2% similar) in 1116 aa overlap (1-1066:1-1115)
10 20 30 40 50 60
pF1KSD MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD NLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GKLLFITEIPELILEDPSEAKENLILQETSVIESLAADGSPGLKSVLSTSRNLSNNCDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GKLLFITEIPELILEDPSEAKENLILQETSVIESLAADGSPGLKSVLSTSRNLSNNCDTG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD EKPVVTFKENIKTREVNRDQGRSFPPKEVKSQTELRKTPVSEARKTPVTQTPTQASNSQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EKPVVTFKENIKTREVNRDQGRSFPPKEVKSQTELRKTPVSEARKTPVTQTPTQASNSQF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD IPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD QVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQSTSQLQVQALTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQSTSQLQVQALTQ
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD QQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQD
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD PIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRSVMAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRSVMAQ
790 800 810 820 830 840
850 860
pF1KSD QANIDRRGKRSPGIFRPEQDPVPRMPFE--------------------------------
:::::::::::::.::::::::::::::
CCDS41 QANIDRRGKRSPGVFRPEQDPVPRMPFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPD
850 860 870 880 890 900
870 880 890 900 910
pF1KSD ------------------KSLLEKPSELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGK
::::::::::::::::::::::::::::::::::::::::::
CCDS41 LYPALLGPLASLPGRSLFKSLLEKPSELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGK
910 920 930 940 950 960
920 930 940 950 960 970
pF1KSD NLTSSSKAELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NLTSSSKAELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSP
970 980 990 1000 1010 1020
980 990 1000 1010 1020 1030
pF1KSD PTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQAST
1030 1040 1050 1060 1070 1080
1040 1050 1060 1070 1080 1090
pF1KSD PSGTWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPP
::::::::::::::::::::::::. . .... ::
CCDS41 PSGTWTGHGPSMEDSSAVLMESLKK-QQHGVQQLGPKRQSEEEGSSSICVAHRGPRPLPS
1090 1100 1110 1120 1130
pF1KSD H
CCDS41 CSLPASTFRVKFKAARTCAHQAQKKTRRRPFWKRRKKGK
1140 1150 1160 1170
>>CCDS81410.1 SMG7 gene_id:9887|Hs108|chr1 (1170 aa)
initn: 7318 init1: 5815 opt: 5828 Z-score: 2871.3 bits: 543.2 E(32554): 1.3e-153
Smith-Waterman score: 7090; 95.0% identity (95.5% similar) in 1121 aa overlap (3-1073:33-1152)
10 20 30
pF1KSD MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTS
:.:.. .:::::::::::::::::::::::
CCDS81 NWMFLQIVIVGENVSFKSQMRTENLKSEEHLKSSN-IRQAEVLKADMTDSKLGPAEVWTS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KSD RQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KSD LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ
130 140 150 160 170 180
160 170 180 190 200 210
pF1KSD HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS
190 200 210 220 230 240
220 230 240 250 260 270
pF1KSD IAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPL
250 260 270 280 290 300
280 290 300 310 320 330
pF1KSD REKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWTQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 REKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWTQLL
310 320 330 340 350 360
340 350 360 370 380 390
pF1KSD ALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWPW
370 380 390 400 410 420
400 410 420 430 440 450
pF1KSD LISLLNSFHPHEEDLSSISATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LISLLNSFHPHEEDLSSISATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQR
430 440 450 460 470 480
460 470 480 490 500 510
pF1KSD RIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEAKENLILQETSVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEAKENLILQETSVI
490 500 510 520 530 540
520 530 540 550 560 570
pF1KSD ESLAADGSPGLKSVLSTSRNLSNNCDTGEKPVVTFKENIKTREVNRDQGRSFPPKEVKSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ESLAADGSPGLKSVLSTSRNLSNNCDTGEKPVVTFKENIKTREVNRDQGRSFPPKEVKSQ
550 560 570 580 590 600
580 590 600 610 620 630
pF1KSD TELRKTPVSEARKTPVTQTPTQASNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TELRKTPVSEARKTPVTQTPTQASNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFS
610 620 630 640 650 660
640 650 660 670 680 690
pF1KSD MGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQP
670 680 690 700 710 720
700 710 720 730 740 750
pF1KSD PSQQPLTSLPAQPTAQSTSQLQVQALTQQQQSPTKAVPALGKSPPHHSGFQQYQQADASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PSQQPLTSLPAQPTAQSTSQLQVQALTQQQQSPTKAVPALGKSPPHHSGFQQYQQADASK
730 740 750 760 770 780
760 770 780 790 800 810
pF1KSD QLWNPPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QLWNPPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYN
790 800 810 820 830 840
820 830 840 850 860
pF1KSD HNPSEVKVPEFYWDSSYSMADNRSVMAQQANIDRRGKRSPGIFRPEQDPVPRMPFE----
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS81 HNPSEVKVPEFYWDSSYSMADNRSVMAQQANIDRRGKRSPGVFRPEQDPVPRMPFEDPKS
850 860 870 880 890 900
870 880
pF1KSD ----------------------------------------------KSLLEKPSELMSHS
::::::::::::::
CCDS81 SPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLASLPGRSLFKSLLEKPSELMSHS
910 920 930 940 950 960
890 900 910 920 930 940
pF1KSD SSFLSLTGFSLNQERYPNNSMFNEVYGKNLTSSSKAELSPSMAPQETSLYSLFEGTPWSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SSFLSLTGFSLNQERYPNNSMFNEVYGKNLTSSSKAELSPSMAPQETSLYSLFEGTPWSP
970 980 990 1000 1010 1020
950 960 970 980 990 1000
pF1KSD SLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKT
1030 1040 1050 1060 1070 1080
1010 1020 1030 1040 1050 1060
pF1KSD DKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSIWSSSMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSIWSSSMM
1090 1100 1110 1120 1130 1140
1070 1080 1090
pF1KSD HPGPSALEQLLMQQKQKQQRGQGTMNPPH
:::::::::::
CCDS81 HPGPSALEQLLMQQKQKQQRGQGTMNPPH
1150 1160 1170
>>CCDS1355.1 SMG7 gene_id:9887|Hs108|chr1 (1137 aa)
initn: 3854 init1: 3762 opt: 3785 Z-score: 1871.3 bits: 358.1 E(32554): 6.5e-98
Smith-Waterman score: 7176; 95.8% identity (95.9% similar) in 1123 aa overlap (1-1077:1-1123)
10 20 30 40 50 60
pF1KSD MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD NLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GKLLFITEIPELILEDPSEAKENLILQETSVIESLAADGSPGLKSVLSTSRNLSNNCDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GKLLFITEIPELILEDPSEAKENLILQETSVIESLAADGSPGLKSVLSTSRNLSNNCDTG
490 500 510 520 530 540
550 560
pF1KSD EKPVVTFKENIKTREVNRDQGRSFPPKEV-------------------------------
:::::::::::::::::::::::::::::
CCDS13 EKPVVTFKENIKTREVNRDQGRSFPPKEVRRDYSKGITVTKNDGKKDNNKRKTETKKCTL
550 560 570 580 590 600
570 580 590 600 610
pF1KSD ---------------KSQTELRKTPVSEARKTPVTQTPTQASNSQFIPIHHPGAFPPLPS
:::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EKLQETGKQNVAVQVKSQTELRKTPVSEARKTPVTQTPTQASNSQFIPIHHPGAFPPLPS
610 620 630 640 650 660
620 630 640 650 660 670
pF1KSD RPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQ
670 680 690 700 710 720
680 690 700 710 720 730
pF1KSD QRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQSTSQLQVQALTQQQQSPTKAVPALGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQSTSQLQVQALTQQQQSPTKAVPALGK
730 740 750 760 770 780
740 750 760 770 780 790
pF1KSD SPPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVM
790 800 810 820 830 840
800 810 820 830 840 850
pF1KSD QQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRSVMAQQANIDRRGKRSPGI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS13 QQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRSVMAQQANIDRRGKRSPGV
850 860 870 880 890 900
860 870 880 890 900 910
pF1KSD FRPEQDPVPRMPFEKSLLEKPSELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGKNLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FRPEQDPVPRMPFEKSLLEKPSELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGKNLTS
910 920 930 940 950 960
920 930 940 950 960 970
pF1KSD SSKAELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SSKAELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHN
970 980 990 1000 1010 1020
980 990 1000 1010 1020 1030
pF1KSD HNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGT
1030 1040 1050 1060 1070 1080
1040 1050 1060 1070 1080 1090
pF1KSD WTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
:::::::::::::::::::::::::::::::::::::::::::
CCDS13 WTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
1090 1100 1110 1120 1130
>>CCDS53445.1 SMG7 gene_id:9887|Hs108|chr1 (1145 aa)
initn: 5084 init1: 3494 opt: 3520 Z-score: 1741.5 bits: 334.1 E(32554): 1.1e-90
Smith-Waterman score: 6462; 91.0% identity (91.1% similar) in 1081 aa overlap (43-1027:1-1081)
20 30 40 50 60 70
pF1KSD EVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTL
::::::::::::::::::::::::::::::
CCDS53 MLVTDLEYALDKKVEQDLWNHAFKNQITTL
10 20 30
80 90 100 110 120 130
pF1KSD QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK
40 50 60 70 80 90
140 150 160 170 180 190
pF1KSD QTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL
100 110 120 130 140 150
200 210 220 230 240 250
pF1KSD AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKA
160 170 180 190 200 210
260 270 280 290 300 310
pF1KSD FIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFS
220 230 240 250 260 270
320 330 340 350 360 370
pF1KSD NETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLR
280 290 300 310 320 330
380 390 400 410 420 430
pF1KSD LRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFELQGFLALRPSFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFELQGFLALRPSFR
340 350 360 370 380 390
440 450 460 470 480 490
pF1KSD NLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPEL
400 410 420 430 440 450
500 510 520 530 540 550
pF1KSD ILEDPSEAKENLILQETSVIESLAADGSPGLKSVLSTSRNLSNNCDTGEKPVVTFKENIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ILEDPSEAKENLILQETSVIESLAADGSPGLKSVLSTSRNLSNNCDTGEKPVVTFKENIK
460 470 480 490 500 510
560
pF1KSD TREVNRDQGRSFPPKEV-------------------------------------------
:::::::::::::::::
CCDS53 TREVNRDQGRSFPPKEVRRDYSKGITVTKNDGKKDNNKRKTETKKCTLEKLQETGKQNVA
520 530 540 550 560 570
570 580 590 600 610 620
pF1KSD ---KSQTELRKTPVSEARKTPVTQTPTQASNSQFIPIHHPGAFPPLPSRPGFPPPTYVIP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VQVKSQTELRKTPVSEARKTPVTQTPTQASNSQFIPIHHPGAFPPLPSRPGFPPPTYVIP
580 590 600 610 620 630
630 640 650 660 670 680
pF1KSD PPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQG
640 650 660 670 680 690
690 700 710 720 730 740
pF1KSD PQQSQPPSQQPLTSLPAQPTAQSTSQLQVQALTQQQQSPTKAVPALGKSPPHHSGFQQYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PQQSQPPSQQPLTSLPAQPTAQSTSQLQVQALTQQQQSPTKAVPALGKSPPHHSGFQQYQ
700 710 720 730 740 750
750 760 770 780 790 800
pF1KSD QADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVMQQQPLEKKMKPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVMQQQPLEKKMKPF
760 770 780 790 800 810
810 820 830 840 850 860
pF1KSD PMEPYNHNPSEVKVPEFYWDSSYSMADNRSVMAQQANIDRRGKRSPGIFRPEQDPVPRMP
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS53 PMEPYNHNPSEVKVPEFYWDSSYSMADNRSVMAQQANIDRRGKRSPGVFRPEQDPVPRMP
820 830 840 850 860 870
870
pF1KSD FE--------------------------------------------------KSLLEKPS
:: ::::::::
CCDS53 FEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLASLPGRSLFKSLLEKPS
880 890 900 910 920 930
880 890 900 910 920 930
pF1KSD ELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGKNLTSSSKAELSPSMAPQETSLYSLFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGKNLTSSSKAELSPSMAPQETSLYSLFE
940 950 960 970 980 990
940 950 960 970 980 990
pF1KSD GTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRT
1000 1010 1020 1030 1040 1050
1000 1010 1020 1030 1040 1050
pF1KSD ADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSI
:::::::::::::::::::::::::::::::
CCDS53 ADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSI
1060 1070 1080 1090 1100 1110
1060 1070 1080 1090
pF1KSD WSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
CCDS53 WSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
1120 1130 1140
1091 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:55:13 2016 done: Thu Nov 3 00:55:14 2016
Total Scan time: 4.690 Total Display time: 0.280
Function used was FASTA [36.3.4 Apr, 2011]