Result of FASTA (ccds) for
pF1KSDA0235
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0235, 1064 aa
1>>>pF1KSDA0235 1064 - 1064 aa - 1064 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.7401+/-0.00114; mu= -2.6413+/- 0.068
mean_var=277.3389+/-57.395, 0's: 0 Z-trim(111.7): 51 B-trim: 707 in 1/51
Lambda= 0.077014
statistics sampled from 12554 (12587) to 12554 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.387), width: 16
Scan time: 3.460
The best scores are: opt bits E(32554)
CCDS1698.1 PUM2 gene_id:23369|Hs108|chr2 (1064) 7067 799.5 0
CCDS74487.1 PUM2 gene_id:23369|Hs108|chr2 (1008) 6664 754.7 2.3e-217
CCDS338.1 PUM1 gene_id:9698|Hs108|chr1 (1186) 5432 617.9 4.2e-176
CCDS44099.1 PUM1 gene_id:9698|Hs108|chr1 (1188) 5418 616.3 1.2e-175
CCDS74486.1 PUM2 gene_id:23369|Hs108|chr2 ( 929) 3772 433.4 1.1e-120
>>CCDS1698.1 PUM2 gene_id:23369|Hs108|chr2 (1064 aa)
initn: 7067 init1: 7067 opt: 7067 Z-score: 4257.6 bits: 799.5 E(32554): 0
Smith-Waterman score: 7067; 100.0% identity (100.0% similar) in 1064 aa overlap (1-1064:1-1064)
10 20 30 40 50 60
pF1KSD MNHDFQALALESRGMGELLPTKKFWEPDDSTKDGQKGIFLGDDEWRETAWGASHHSMSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MNHDFQALALESRGMGELLPTKKFWEPDDSTKDGQKGIFLGDDEWRETAWGASHHSMSQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IMVQRRSGQGFHGNSEVNAILSPRSESGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 IMVQRRSGQGFHGNSEVNAILSPRSESGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD AETDGPEKGDQKGKASPFEEDQNRDLKQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 AETDGPEKGDQKGKASPFEEDQNRDLKQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ASPTEVVERLGPNTNPSEGLGPLPNPTANKPLVEEFSNPETQNLDAMEQVGLESLQFDYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 ASPTEVVERLGPNTNPSEGLGPLPNPTANKPLVEEFSNPETQNLDAMEQVGLESLQFDYP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GNQVPMDSSGATVGLFDYNSQQQLFQRTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GNQVPMDSSGATVGLFDYNSQQQLFQRTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD QAAAAANNTASQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QAAAAANNTASQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD FGQGLATGMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 FGQGLATGMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD AAAAGGTASSLTGSTNGLFRPIGTQPPQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 AAAAGGTASSLTGSTNGLFRPIGTQPPQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD HGPGQPGSTSLGFGSGNSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 HGPGQPGSTSLGFGSGNSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRSSS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD SLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD RYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 RYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVI
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD QKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD KCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQT
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD EKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH
970 980 990 1000 1010 1020
1030 1040 1050 1060
pF1KSD KIRPHITTLRKYTYGKHILAKLEKYYLKNSPDLGPIGGPPNGML
::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KIRPHITTLRKYTYGKHILAKLEKYYLKNSPDLGPIGGPPNGML
1030 1040 1050 1060
>>CCDS74487.1 PUM2 gene_id:23369|Hs108|chr2 (1008 aa)
initn: 6664 init1: 6664 opt: 6664 Z-score: 4016.0 bits: 754.7 E(32554): 2.3e-217
Smith-Waterman score: 6664; 100.0% identity (100.0% similar) in 1008 aa overlap (57-1064:1-1008)
30 40 50 60 70 80
pF1KSD PDDSTKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSE
::::::::::::::::::::::::::::::
CCDS74 MSQPIMVQRRSGQGFHGNSEVNAILSPRSE
10 20 30
90 100 110 120 130 140
pF1KSD SGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KSD KQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNP
100 110 120 130 140 150
210 220 230 240 250 260
pF1KSD TANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQ
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD RTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTA
220 230 240 250 260 270
330 340 350 360 370 380
pF1KSD AGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQVL
280 290 300 310 320 330
390 400 410 420 430 440
pF1KSD RAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQTGA
340 350 360 370 380 390
450 460 470 480 490 500
pF1KSD LVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAAAAAGGTASSLTGSTNGLFRPIGTQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAAAAAGGTASSLTGSTNGLFRPIGTQP
400 410 420 430 440 450
510 520 530 540 550 560
pF1KSD PQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLGAAIGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLGAAIGSA
460 470 480 490 500 510
570 580 590 600 610 620
pF1KSD LSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPL
520 530 540 550 560 570
630 640 650 660 670 680
pF1KSD PSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSS
580 590 600 610 620 630
690 700 710 720 730 740
pF1KSD SQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQ
640 650 660 670 680 690
750 760 770 780 790 800
pF1KSD KLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPL
700 710 720 730 740 750
810 820 830 840 850 860
pF1KSD ALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF
760 770 780 790 800 810
870 880 890 900 910 920
pF1KSD IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH
820 830 840 850 860 870
930 940 950 960 970 980
pF1KSD VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP
880 890 900 910 920 930
990 1000 1010 1020 1030 1040
pF1KSD HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY
940 950 960 970 980 990
1050 1060
pF1KSD LKNSPDLGPIGGPPNGML
::::::::::::::::::
CCDS74 LKNSPDLGPIGGPPNGML
1000
>>CCDS338.1 PUM1 gene_id:9698|Hs108|chr1 (1186 aa)
initn: 5044 init1: 3193 opt: 5432 Z-score: 3275.1 bits: 617.9 E(32554): 4.2e-176
Smith-Waterman score: 5432; 77.9% identity (91.2% similar) in 1074 aa overlap (1-1064:128-1186)
10 20
pF1KSD MNHDFQALALESRGMGE-LLPTKKFWEPDD
.::::::::::.:.::: ::: ::::: :.
CCDS33 SGGGGYNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDE
100 110 120 130 140 150
30 40 50 60 70 80
pF1KSD STKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSESGG
:.::: ::::::: .::..:::.: ::.::::::::: ::.:: :::::..:::::::::
CCDS33 SSKDGPKGIFLGD-QWRDSAWGTSDHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGG
160 170 180 190 200 210
90 100 110 120 130 140
pF1KSD LGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDLKQG
::::::::::::::. :: .:::.:: :::..: .::..:.:.. :. :. :::.
CCDS33 LGVSMVEYVLSSSPG---DSCLRKGGFGPRDADSDENDKGEKKNKGT-FDGDKLGDLKEE
220 230 240 250 260 270
150 160 170 180 190 200
pF1KSD DDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNPTAN
: .: :: . ::.::: :::.::::. : : .:: . :::: : ::::. : . ..
CCDS33 GDVMDKTNGLPVQNGIDADVKDFSRTPGNCQNSANEV-DLLGPNQNGSEGLAQLTSTNGA
280 290 300 310 320 330
210 220 230 240 250 260
pF1KSD KPLVEEFSNPETQN--LDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQR
:: ::.::: :.:. :: ::.::.: ::::: :.:::.::..:::::::::::::::::
CCDS33 KP-VEDFSNMESQSVPLDPMEHVGMEPLQFDYSGTQVPVDSAAATVGLFDYNSQQQLFQR
340 350 360 370 380 390
270 280 290 300 310 320
pF1KSD TNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAA
:::.:::::::::::::::::.:::: ::::::::::::::::::::::::::
CCDS33 PNALAVQQLTAAQQQQYALAAAHQPHI------GLAPAAFVPNPYIISAAPPGTDPYTA-
400 410 420 430 440
330 340 350 360 370 380
pF1KSD GLAAAATLAGPAVVPPQYYGV-PWGVYPANLFQQQAAAAA--NNTASQQAASQAQPGQQQ
:::::::: :::::: ::::: :::::::.:::::::::: .:.:.::.. ::: ::::
CCDS33 GLAAAATL-GPAVVPHQYYGVTPWGVYPASLFQQQAAAAAAATNSANQQTTPQAQQGQQQ
450 460 470 480 490 500
390 400 410 420 430 440
pF1KSD VLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQT
:::.::.::::::::.:::::.. :.::::.: .::::::::.::::: ::::.::::::
CCDS33 VLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAFGQGLAAGMPGYPVLAPAAYYDQT
510 520 530 540 550 560
450 460 470 480 490 500
pF1KSD GALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAA---AAAAAGGTASSLTGSTNGLFRP
:::::. :::.::::::::.::.::.:::.::::: :::.:.:.:..:.:.::: :::
CCDS33 GALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRP
570 580 590 600 610 620
510 520 530 540 550 560
pF1KSD IGTQPPQQQ-QQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLG
.::: :: : ::::..:: :.::::..::...::::::::.: .::..:::::::..:::
CCDS33 LGTQQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLG
630 640 650 660 670 680
570 580 590 600 610 620
pF1KSD AAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPS
:..::::.:::..:..: ..:..::.::. :::::::.::::.:::. :::.:.:::::.
CCDS33 ATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNGLSFSSSPG
690 700 710 720 730 740
630 640 650 660 670 680
pF1KSD PIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTS
:.::::::: :::: :::::::::::::::.:::::::::::::::::::::::::::.:
CCDS33 PVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSGRYISAAPGAEAKYRSASSAS
750 760 770 780 790 800
690 700 710 720 730 740
pF1KSD SLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHG
:::: :: :: :::::. ::.::::::::::::::::.::::::.. :::.::::::::
CCDS33 SLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHG
810 820 830 840 850 860
750 760 770 780 790 800
pF1KSD SRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIR
::::: :::::::::::.:::::::::::::.:::::::::::::::::.:::::: :::
CCDS33 SRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIR
870 880 890 900 910 920
810 820 830 840 850 860
pF1KSD GHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQ
:::: :::::::::::::::: : ::::.:::.:::::::::::::::::::::::::::
CCDS33 GHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ
930 940 950 960 970 980
870 880 890 900 910 920
pF1KSD PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYG
::::::::::::::::.:::::::::::::::::: .::::::::::::::::::::::
CCDS33 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYG
990 1000 1010 1020 1030 1040
930 940 950 960 970 980
pF1KSD NYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVC
::::::::::::::::::::.::::.::.::::::::::::::::::::.:::.::::::
CCDS33 NYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVC
1050 1060 1070 1080 1090 1100
990 1000 1010 1020 1030 1040
pF1KSD CQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILA
.::::::::::::::::::::::::::.:::.::::.::::::::.:::::::::::::
CCDS33 TMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILA
1110 1120 1130 1140 1150 1160
1050 1060
pF1KSD KLEKYYLKNSPDLGPIGGPPNGML
::::::.::. ::::: :::::..
CCDS33 KLEKYYMKNGVDLGPICGPPNGII
1170 1180
>>CCDS44099.1 PUM1 gene_id:9698|Hs108|chr1 (1188 aa)
initn: 4069 init1: 1723 opt: 5418 Z-score: 3266.7 bits: 616.3 E(32554): 1.2e-175
Smith-Waterman score: 5418; 77.8% identity (91.0% similar) in 1076 aa overlap (1-1064:128-1188)
10 20
pF1KSD MNHDFQALALESRGMGE-LLPTKKFWEPDD
.::::::::::.:.::: ::: ::::: :.
CCDS44 SGGGGYNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDE
100 110 120 130 140 150
30 40 50 60 70 80
pF1KSD STKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSESGG
:.::: ::::::: .::..:::.: ::.::::::::: ::.:: :::::..:::::::::
CCDS44 SSKDGPKGIFLGD-QWRDSAWGTSDHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGG
160 170 180 190 200 210
90 100 110 120 130 140
pF1KSD LGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDLKQG
::::::::::::::. :: .:::.:: :::..: .::..:.:.. :. :. :::.
CCDS44 LGVSMVEYVLSSSPG---DSCLRKGGFGPRDADSDENDKGEKKNKGT-FDGDKLGDLKEE
220 230 240 250 260 270
150 160 170 180 190 200
pF1KSD DDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNPTAN
: .: :: . ::.::: :::.::::. : : .:: . :::: : ::::. : . ..
CCDS44 GDVMDKTNGLPVQNGIDADVKDFSRTPGNCQNSANEV-DLLGPNQNGSEGLAQLTSTNGA
280 290 300 310 320 330
210 220 230 240 250 260
pF1KSD KPLVEEFSNPETQN--LDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQR
:: ::.::: :.:. :: ::.::.: ::::: :.:::.::..:::::::::::::::::
CCDS44 KP-VEDFSNMESQSVPLDPMEHVGMEPLQFDYSGTQVPVDSAAATVGLFDYNSQQQLFQR
340 350 360 370 380 390
270 280 290 300 310 320
pF1KSD TNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAA
:::.:::::::::::::::::.:::: ::::::::::::::::::::::::::
CCDS44 PNALAVQQLTAAQQQQYALAAAHQPHI------GLAPAAFVPNPYIISAAPPGTDPYTA-
400 410 420 430 440
330 340 350 360 370 380
pF1KSD GLAAAATLAGPAVVPPQYYGV-PWGVYPANLFQQQAAAAA--NNTASQQAASQAQPGQQQ
:::::::: :::::: ::::: :::::::.:::::::::: .:.:.::.. ::: ::::
CCDS44 GLAAAATL-GPAVVPHQYYGVTPWGVYPASLFQQQAAAAAAATNSANQQTTPQAQQGQQQ
450 460 470 480 490 500
390 400 410 420 430 440
pF1KSD VLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQT
:::.::.::::::::.:::::.. :.::::.: .::::::::.::::: ::::.::::::
CCDS44 VLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAFGQGLAAGMPGYPVLAPAAYYDQT
510 520 530 540 550 560
450 460 470 480 490 500
pF1KSD GALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAA---AAAAAGGTASSLTGSTNGLFRP
:::::. :::.::::::::.::.::.:::.::::: :::.:.:.:..:.:.::: :::
CCDS44 GALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRP
570 580 590 600 610 620
510 520 530 540 550 560
pF1KSD IGTQPPQQQ-QQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLG
.::: :: : ::::..:: :.::::..::...::::::::.: .::..:::::::..:::
CCDS44 LGTQQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLG
630 640 650 660 670 680
570 580 590 600 610 620
pF1KSD AAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPS
:..::::.:::..:..: ..:..::.::. :::::::.::::.:::. :::.:.:::::.
CCDS44 ATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNGLSFSSSPG
690 700 710 720 730 740
630 640 650 660 670 680
pF1KSD PIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTS
:.::::::: :::: :::::::::::::::.:::::::::::::::::::::::::::.:
CCDS44 PVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSGRYISAAPGAEAKYRSASSAS
750 760 770 780 790 800
690 700 710 720 730 740
pF1KSD SLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHG
:::: :: :: :::::. ::.::::::::::::::::.::::::.. :::.::::::::
CCDS44 SLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHG
810 820 830 840 850 860
750 760 770 780 790 800
pF1KSD SRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIR
::::: :::::::::::.:::::::::::::.:::::::::::::::::.:::::: :::
CCDS44 SRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIR
870 880 890 900 910 920
810 820 830 840 850
pF1KSD GHVLPLALQMYGCRVIQKALESISSDQQ--SEMVKELDGHVLKCVKDQNGNHVVQKCIEC
:::: :::::::::::::::: : :::: .:::.:::::::::::::::::::::::::
CCDS44 GHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIEC
930 940 950 960 970 980
860 870 880 890 900 910
pF1KSD VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQ
::::::::::::::::::.:::::::::::::::::: .::::::::::::::::::::
CCDS44 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQ
990 1000 1010 1020 1030 1040
920 930 940 950 960 970
pF1KSD YGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDE
::::::::::::::::::::::.::::.::.::::::::::::::::::::.:::.::::
CCDS44 YGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDE
1050 1060 1070 1080 1090 1100
980 990 1000 1010 1020 1030
pF1KSD VCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHI
:: .::::::::::::::::::::::::::.:::.::::.::::::::.:::::::::::
CCDS44 VCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHI
1110 1120 1130 1140 1150 1160
1040 1050 1060
pF1KSD LAKLEKYYLKNSPDLGPIGGPPNGML
::::::::.::. ::::: :::::..
CCDS44 LAKLEKYYMKNGVDLGPICGPPNGII
1170 1180
>>CCDS74486.1 PUM2 gene_id:23369|Hs108|chr2 (929 aa)
initn: 3896 init1: 3420 opt: 3772 Z-score: 2279.9 bits: 433.4 E(32554): 1.1e-120
Smith-Waterman score: 5987; 92.2% identity (92.2% similar) in 1008 aa overlap (57-1064:1-929)
30 40 50 60 70 80
pF1KSD PDDSTKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSE
::::::::::::::::::::::::::::::
CCDS74 MSQPIMVQRRSGQGFHGNSEVNAILSPRSE
10 20 30
90 100 110 120 130 140
pF1KSD SGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KSD KQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNP
100 110 120 130 140 150
210 220 230 240 250 260
pF1KSD TANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQ
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD RTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTA
220 230 240 250 260 270
330 340 350 360 370 380
pF1KSD AGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQVL
280 290 300 310 320 330
390 400 410 420 430 440
pF1KSD RAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQTGA
340 350 360 370 380 390
450 460 470 480 490 500
pF1KSD LVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAAAAAGGTASSLTGSTNGLFRPIGTQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAAAAAGGTASSLTGSTNGLFRPIGTQP
400 410 420 430 440 450
510 520 530 540 550 560
pF1KSD PQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLGAAIGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLGAAIGSA
460 470 480 490 500 510
570 580 590 600 610 620
pF1KSD LSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPL
:::::::
CCDS74 LSGFGSS-----------------------------------------------------
630 640 650 660 670 680
pF1KSD PSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSS
::::::::::::::::::::::::::::::::::
CCDS74 --------------------------GGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSS
520 530 540 550
690 700 710 720 730 740
pF1KSD SQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQ
560 570 580 590 600 610
750 760 770 780 790 800
pF1KSD KLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPL
620 630 640 650 660 670
810 820 830 840 850 860
pF1KSD ALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF
680 690 700 710 720 730
870 880 890 900 910 920
pF1KSD IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH
740 750 760 770 780 790
930 940 950 960 970 980
pF1KSD VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP
800 810 820 830 840 850
990 1000 1010 1020 1030 1040
pF1KSD HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY
860 870 880 890 900 910
1050 1060
pF1KSD LKNSPDLGPIGGPPNGML
::::::::::::::::::
CCDS74 LKNSPDLGPIGGPPNGML
920
1064 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:50:13 2016 done: Thu Nov 3 00:50:14 2016
Total Scan time: 3.460 Total Display time: 0.170
Function used was FASTA [36.3.4 Apr, 2011]