Result of FASTA (ccds) for
pF1KSDA0221
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0221, 1129 aa
1>>>pF1KSDA0221 1129 - 1129 aa - 1129 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6919+/-0.00105; mu= 14.4146+/- 0.064
mean_var=196.6459+/-40.157, 0's: 0 Z-trim(111.6): 25 B-trim: 125 in 1/50
Lambda= 0.091460
statistics sampled from 12513 (12533) to 12513 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.385), width: 16
Scan time: 3.620
The best scores are: opt bits E(32554)
CCDS74315.1 UPF1 gene_id:5976|Hs108|chr19 (1129) 7595 1015.6 0
CCDS12386.1 UPF1 gene_id:5976|Hs108|chr19 (1118) 5115 688.4 2.5e-197
CCDS3700.2 ZGRF1 gene_id:55345|Hs108|chr4 (2104) 562 87.9 2.7e-16
CCDS8187.1 IGHMBP2 gene_id:3508|Hs108|chr11 ( 993) 496 78.8 6.7e-14
CCDS6947.1 SETX gene_id:23064|Hs108|chr9 (2677) 450 73.2 9.1e-12
>>CCDS74315.1 UPF1 gene_id:5976|Hs108|chr19 (1129 aa)
initn: 7595 init1: 7595 opt: 7595 Z-score: 5424.7 bits: 1015.6 E(32554): 0
Smith-Waterman score: 7595; 99.9% identity (100.0% similar) in 1129 aa overlap (1-1129:1-1129)
10 20 30 40 50 60
pF1KSD MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GPGGAGAGSAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD SSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD TPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120
pF1KSD PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
1090 1100 1110 1120
>>CCDS12386.1 UPF1 gene_id:5976|Hs108|chr19 (1118 aa)
initn: 7505 init1: 5103 opt: 5115 Z-score: 3656.2 bits: 688.4 E(32554): 2.5e-197
Smith-Waterman score: 7487; 98.9% identity (99.0% similar) in 1129 aa overlap (1-1129:1-1118)
10 20 30 40 50 60
pF1KSD MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GPGGAGAGSAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDS--------
310 320 330 340 350
370 380 390 400 410 420
pF1KSD WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ---DMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
360 370 380 390 400
430 440 450 460 470 480
pF1KSD QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
410 420 430 440 450 460
490 500 510 520 530 540
pF1KSD DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
470 480 490 500 510 520
550 560 570 580 590 600
pF1KSD LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
530 540 550 560 570 580
610 620 630 640 650 660
pF1KSD ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
590 600 610 620 630 640
670 680 690 700 710 720
pF1KSD VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
650 660 670 680 690 700
730 740 750 760 770 780
pF1KSD AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
710 720 730 740 750 760
790 800 810 820 830 840
pF1KSD AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
770 780 790 800 810 820
850 860 870 880 890 900
pF1KSD QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
830 840 850 860 870 880
910 920 930 940 950 960
pF1KSD NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
890 900 910 920 930 940
970 980 990 1000 1010 1020
pF1KSD SSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
950 960 970 980 990 1000
1030 1040 1050 1060 1070 1080
pF1KSD TPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
1010 1020 1030 1040 1050 1060
1090 1100 1110 1120
pF1KSD PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
1070 1080 1090 1100 1110
>>CCDS3700.2 ZGRF1 gene_id:55345|Hs108|chr4 (2104 aa)
initn: 530 init1: 200 opt: 562 Z-score: 406.0 bits: 87.9 E(32554): 2.7e-16
Smith-Waterman score: 702; 32.2% identity (64.6% similar) in 438 aa overlap (483-902:1632-2055)
460 470 480 490 500 510
pF1KSD YHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR--PLSLIQGPPGTGKT
.: .. :: . . :...:.: :.::.
CCDS37 TLKLASELIQVHKLNKDQATALIQIAQMMASHESIEEVKELQTHTFPITIIHGVFGAGKS
1610 1620 1630 1640 1650 1660
520 530 540 550
pF1KSD VTSATIVY---HLARQGNGP---------VLVCAPSNIAVDQLTEKIHQTGLK-VVRLCA
:... .: .....: .:. . .:.:::.. . . :.. .:.
CCDS37 YLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLGLLSLGFENFIRV--
1670 1680 1690 1700 1710
560 570 580 590 600 610
pF1KSD KSREAIDSPVSFLALHNQIRNM-DSMPELQKLQQLKDETGELSSADEKRYRALKRTAERE
: . : .:. .:: .: ... ::. :.. .: : .: . : ..:
CCDS37 GSVRKIAKPILPYSLHAGSENESEQLKELHALMK-EDLTPTERVYVRKSIEQHKLGTNRT
1720 1730 1740 1750 1760 1770
620 630 640 650 660 670
pF1KSD LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV-LGAKQLILVGDHC
:: .. :. ::.. : . ..: ...:: .: ::: ..:.. . ..::::::
CCDS37 LLKQVRVVGVTCAACPFPCMNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPK
1780 1790 1800 1810 1820 1830
680 690 700 710 720 730
pF1KSD QLGPVVMCKKAA-KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQN
:: :... . :: . :: :.::.:: ..: .:: :..::: :::.::. ...::.:.:.:
CCDS37 QLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMN
1840 1850 1860 1870 1880 1890
740 750 760 770 780 790
pF1KSD GVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA
::: .: ..: : . :: ..: :.: .. :. : .::. . :. .:. .
CCDS37 GVTEIERSPL---LEW-LP--TLCFYNVKGLEQIERDN-SFHNVAEATFTLKLIQSLIAS
1900 1910 1920 1930 1940 1950
800 810 820 830 840 850
pF1KSD GAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVR
: ..::.:: :..: : . .. . ..: . :....:::::: ::..:::::::
CCDS37 GIAGSMIGVITLYKSQM-YKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVR
1960 1970 1980 1990 2000 2010
860 870 880 890 900 910
pF1KSD ANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPL
. . .::... .:.::::::.. ..:::: : :. ::......
CCDS37 TRQ---VGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWGRVIQHCEGREDGLQHAN
2020 2030 2040 2050 2060
920 930 940 950 960 970
pF1KSD NNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTH
CCDS37 QYEPQLNHLLKDYFEKQVEEKQKKKSEKEKSKDKSHS
2070 2080 2090 2100
>>CCDS8187.1 IGHMBP2 gene_id:3508|Hs108|chr11 (993 aa)
initn: 379 init1: 221 opt: 496 Z-score: 363.0 bits: 78.8 E(32554): 6.7e-14
Smith-Waterman score: 678; 31.0% identity (59.3% similar) in 565 aa overlap (389-906:86-633)
360 370 380 390 400 410
pF1KSD IIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPD--NYGDEIAIEL-----RSSVG
: .. . : : :...: . ..::
CCDS81 RTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQKSVT
60 70 80 90 100 110
420 430 440 450 460
pF1KSD APVEVTHNFQVDF----------VWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEV
. . .:.::... . ..... :...:: .. ... .. . . :.:. .
CCDS81 VAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSA
120 130 140 150 160 170
470 480 490 500 510 520
pF1KSD EDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIVYHL
. . . : : : . :: :: .: :. :..:.::::::::.: . :. .
CCDS81 PSPASEIH-PLTFFNTCL---DTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA
180 190 200 210 220 230
530 540 550 560 570
pF1KSD ARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSR--EAID--SPVSFLALHN--
..:: :: :::::::::.:.:.. ...:: .: :.:. : . :: .
CCDS81 VKQGL-KVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSA
240 250 260 270 280 290
580 590 600 610 620
pF1KSD QI-----RNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAER---ELLMNADVICC
:: ...:.. .: : : : ... . . . ::. : : : .:.:.
CCDS81 QIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLA
300 310 320 330 340 350
630 640 650 660 670 680
pF1KSD TCVGAG--DPR--LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVM
: .::. : : . : ..::: .:: : : .:. : :.. ::.::: :: :...
CCDS81 TNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPL-LKARKCILAGDHKQLPPTTV
360 370 380 390 400
690 700 710 720 730 740
pF1KSD CKKAAKAGLSQSLFERLVV-LGIRPIR-LQVQYRMHPALSAFPSNIFYEGSLQNGVTAAD
.::: :::: ::.:::. : : .: : :::::: :. . :. .: :.: ..:
CCDS81 SHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVAR
410 420 430 440 450 460
750 760 770 780 790
pF1KSD RVKKGFD--FQWPQPDKPMFFYVTQG-------QEEIASSGTSYLNRTEAANVEKITTKL
.. . . . :... : : .:. :.:. : . ... :
CCDS81 HLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQA----L
470 480 490 500 510 520
800 810 820 830 840 850
pF1KSD LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS
. ::. .:....::. : . : : . .: . :.:: :::.::::::. .:::
CCDS81 VDAGVPARDIAVVSPYNLQVDLLRQSL-----VHR--HPELEIKSVDGFQGREKEAVILS
530 540 550 560 570
860 870 880 890 900 910
pF1KSD CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVE
::.:.. .::: . ::.:::.:::: : .. . ...... . . :..:. ..
CCDS81 FVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRT
580 590 600 610 620 630
920 930 940 950 960 970
pF1KSD GPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYF
CCDS81 AFEYLDDIVPENYSHENSQGSSHAATKPQGPATSTRTGSQRQEGGQEAAAPARQGRKKPA
640 650 660 670 680 690
>>CCDS6947.1 SETX gene_id:23064|Hs108|chr9 (2677 aa)
initn: 581 init1: 135 opt: 450 Z-score: 324.8 bits: 73.2 E(32554): 9.1e-12
Smith-Waterman score: 626; 29.5% identity (55.2% similar) in 665 aa overlap (479-1022:1931-2578)
450 460 470 480 490 500
pF1KSD SGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT----VLQRP----LSL
: :.:..: :..: : . : . :
CCDS69 QLARAVLNPNPMDFCTKDLLTTTSERIIAYLRDFNEDQKKAIETAYAMVKHSPSVAKICL
1910 1920 1930 1940 1950 1960
510 520 530 540
pF1KSD IQGPPGTGKTVTSATIVYHL----ARQGNGP-----------VLVCAPSNIAVDQLTEKI
:.:::::::. : . ..:.: :.:.. :::::::: :::.: .::
CCDS69 IHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELMKKI
1970 1980 1990 2000 2010 2020
550 560 570
pF1KSD ------------HQTG----LKVVRLCAKS-------REAIDS----------PVSFLAL
. : ...::: .. . ..:: : :.
CCDS69 ILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINSEVLKFSLDSQVNHRMKKELPSHVQAM
2030 2040 2050 2060 2070 2080
580 590 600 610
pF1KSD HNQIRNMD-SMPELQKLQQL--------KDETGE-LSSADEKRYRALKRTAERE------
:.. . .: .. ::.. . : ..: : .:.....: . .. : .
CCDS69 HKRKEFLDYQLDELSRQRALCRGGREIQRQELDENISKVSKERQELASKIKEVQGRPQKT
2090 2100 2110 2120 2130 2140
620 630 640 650 660
pF1KSD ---LLMNADVICCTCVGAGDPRLAK-------MQFRSILIDESTQATEPECMVPVVLGAK
..... .:::: .: : . . : ...::. :. : : ..:.. .
CCDS69 QSIIILESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCN
2150 2160 2170 2180 2190 2200
670 680 690 700 710
pF1KSD QLILVGDHCQLGPVVMCKKAAKAGLSQSL---FERLVVLGIR-------PI-RLQVQYRM
.:::::: :: :.:. :: . : .::. : ::. ... :: .: :::::
CCDS69 KLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCRLLEENVEHNMISRLPILQLTVQYRM
2210 2220 2230 2240 2250 2260
720 730 740 750 760 770
pF1KSD HPALSAFPSNIFYEGSLQ-NGVTAADRVKKGFDFQWP-QPDKPMFFYVTQGQEEIASSGT
:: . :::: :. .:. : : : : .. .:: :: . : : .:.:. ..
CCDS69 HPDICLFPSNYVYNRNLKTNRQTEAIRCSS----DWPFQPY--LVFDVGDGSER--RDND
2270 2280 2290 2300 2310
780 790 800 810 820 830
pF1KSD SYLNRTEAANVEKITTKLLKAGAKP---DQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQ
::.: : : .: ::.: : .::::: :..:.. ..: ... . :
CCDS69 SYINVQEIKLVMEII-KLIKDKRKDVSFRNIGIITHYKAQKT-MIQK-DLDKEFDRK--G
2320 2330 2340 2350 2360
840 850 860 870 880
pF1KSD EVEIASVDAFQGREKDFIILSCVRANEHQG-IGFLNDPRRLNVALTRARYGVIIVGNPKA
.:. .:::::::.:: .:..::::: :: :::: . .::::..:::.:...:.:. ..
CCDS69 PAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRT
2370 2380 2390 2400 2410 2420
890 900 910 920 930 940
pF1KSD LSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSK--P---RKLVN--TINP-GARF-
: .. ::.:.. ... .... .: :.. ... : : :.:.. :: : :.:
CCDS69 LMENQHWNQLIQDAQKRGAIIKTCDKNYRHDAVKILKLKPVLQRSLTHPPTIAPEGSRPQ
2430 2440 2450 2460 2470 2480
950 960 970 980
pF1KSD --MTTAMYDAREAI--IPGSVYDRSSQGRPSSMYFQT--------HDQIGMISAGPSHVA
. .. :. : . .:.: :... .. . :::. : .
CCDS69 GGLPSSKLDSGFAKTSVAASLYHTPSDSKEITLTVTSKDPERPPVHDQL----QDPRLLK
2490 2500 2510 2520 2530 2540
990 1000 1010 1020 1030 1040
pF1KSD AMNIPIPFNLVM-PPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLP
:.: . .. . :.: :. :.. : :
CCDS69 RMGIEVKGGIFLWDPQPSSPQHPGATPPTGEPGFPVVHQDLSHIQQPAAVVAALSSHKPP
2550 2560 2570 2580 2590 2600
1050 1060 1070 1080 1090 1100
pF1KSD NSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
CCDS69 VRGEPPAASPEASTCQSKCDDPEEELCHRREARAFSEGEQEKCGSETHHTRRNSRWDKRT
2610 2620 2630 2640 2650 2660
1129 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:45:47 2016 done: Thu Nov 3 00:45:48 2016
Total Scan time: 3.620 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]