FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0205, 370 aa
  1>>>pF1KSDA0205 370 - 370 aa - 370 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4109+/-0.000994; mu= 15.5379+/- 0.059
 mean_var=62.9688+/-13.201, 0's: 0 Z-trim(103.3): 20  B-trim: 2 in 1/51
 Lambda= 0.161626
 statistics sampled from 7351 (7359) to 7351 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.595), E-opt: 0.2 (0.226), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS31018.1 LPGAT1 gene_id:9926|Hs108|chr1         ( 370) 2527 598.2 3.8e-171


>>CCDS31018.1 LPGAT1 gene_id:9926|Hs108|chr1              (370 aa)
 initn: 2527 init1: 2527 opt: 2527  Z-score: 3186.2  bits: 598.2 E(32554): 3.8e-171
Smith-Waterman score: 2527; 100.0% identity (100.0% similar) in 370 aa overlap (1-370:1-370)

               10        20        30        40        50        60
pF1KSD MAITLEEAPWLGWLLVKALMRFAFMVVNNLVAIPSYICYVIILQPLRVLDSKRFWYIEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAITLEEAPWLGWLLVKALMRFAFMVVNNLVAIPSYICYVIILQPLRVLDSKRFWYIEGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD MYKWLLGMVASWGWYAGYTVMEWGEDIKAVSKDEAVMLVNHQATGDVCTLMMCLQDKGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MYKWLLGMVASWGWYAGYTVMEWGEDIKAVSKDEAVMLVNHQATGDVCTLMMCLQDKGLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VAQMMWLMDHIFKYTNFGIVSLVHGDFFIRQGRSYRDQQLLLLKKHLENNYRSRDRKWIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VAQMMWLMDHIFKYTNFGIVSLVHGDFFIRQGRSYRDQQLLLLKKHLENNYRSRDRKWIV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LFPEGGFLRKRRETSQAFAKKNNLPFLTNVTLPRSGATKIILNALVAQQKNGSPAGGDAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LFPEGGFLRKRRETSQAFAKKNNLPFLTNVTLPRSGATKIILNALVAQQKNGSPAGGDAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ELDSKSKGLQWIIDTTIAYPKAEPIDIQTWILGYRKPTVTHVHYRIFPIKDVPLETDDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELDSKSKGLQWIIDTTIAYPKAEPIDIQTWILGYRKPTVTHVHYRIFPIKDVPLETDDLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD TWLYQRFVEKEDLLSHFYETGAFPPSKGHKEAVSREMTLSNLWIFLIQSFAFLSGYMWYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TWLYQRFVEKEDLLSHFYETGAFPPSKGHKEAVSREMTLSNLWIFLIQSFAFLSGYMWYN
              310       320       330       340       350       360

              370
pF1KSD IIQYFYHCLF
       ::::::::::
CCDS31 IIQYFYHCLF
              370




370 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:39:10 2016 done: Thu Nov  3 00:39:10 2016
 Total Scan time:  2.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]