Result of FASTA (ccds) for
pF1KSDA0190
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0190, 803 aa
1>>>pF1KSDA0190 803 - 803 aa - 803 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3062+/-0.000968; mu= 6.8465+/- 0.058
mean_var=160.8891+/-33.157, 0's: 0 Z-trim(110.0): 61 B-trim: 145 in 2/51
Lambda= 0.101114
statistics sampled from 11211 (11270) to 11211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.346), width: 16
Scan time: 3.450
The best scores are: opt bits E(32554)
CCDS45537.1 USP10 gene_id:9100|Hs108|chr16 ( 798) 5293 784.7 0
CCDS62004.1 USP10 gene_id:9100|Hs108|chr16 ( 802) 5253 778.8 0
>>CCDS45537.1 USP10 gene_id:9100|Hs108|chr16 (798 aa)
initn: 5293 init1: 5293 opt: 5293 Z-score: 4182.0 bits: 784.7 E(32554): 0
Smith-Waterman score: 5293; 100.0% identity (100.0% similar) in 798 aa overlap (6-803:1-798)
10 20 30 40 50 60
pF1KSD MKRAAMALHSPQYIFGDFSPDEFNQFFVTPRSSVELPPYSGTVLCGTQAVDKLPDGQEYQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MALHSPQYIFGDFSPDEFNQFFVTPRSSVELPPYSGTVLCGTQAVDKLPDGQEYQ
10 20 30 40 50
70 80 90 100 110 120
pF1KSD RIEFGVDEVIEPSDTLPRTPSYSISSTLNPQAPEFILGCTASKITPDGITKEASYGSIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RIEFGVDEVIEPSDTLPRTPSYSISSTLNPQAPEFILGCTASKITPDGITKEASYGSIDC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD QYPGSALALDGSSNVEAEVLENDGVSGGLGQRERKKKKKRPPGYYSYLKDGGDDSISTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QYPGSALALDGSSNVEAEVLENDGVSGGLGQRERKKKKKRPPGYYSYLKDGGDDSISTEA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD LVNGHANSAVPNSVSAEDAEFMGDMPPSVTPRTCNSPQNSTDSVSDIVPDSPFPGALGSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LVNGHANSAVPNSVSAEDAEFMGDMPPSVTPRTCNSPQNSTDSVSDIVPDSPFPGALGSD
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD TRTAGQPEGGPGADFGQSCFPAEAGRDTLSRTAGAQPCVGTDTTENLGVANGQILESSGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TRTAGQPEGGPGADFGQSCFPAEAGRDTLSRTAGAQPCVGTDTTENLGVANGQILESSGE
240 250 260 270 280 290
310 320 330 340 350 360
pF1KSD GTATNGVELHTTESIDLDPTKPESASPPADGTGSASGTLPVSQPKSWASLFHDSKPSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GTATNGVELHTTESIDLDPTKPESASPPADGTGSASGTLPVSQPKSWASLFHDSKPSSSS
300 310 320 330 340 350
370 380 390 400 410 420
pF1KSD PVAYVETKYSPPAISPLVSEKQVEVKEGLVPVSEDPVAIKIAELLENVTLIHKPVSLQPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PVAYVETKYSPPAISPLVSEKQVEVKEGLVPVSEDPVAIKIAELLENVTLIHKPVSLQPR
360 370 380 390 400 410
430 440 450 460 470 480
pF1KSD GLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEFTNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEFTNM
420 430 440 450 460 470
490 500 510 520 530 540
pF1KSD PVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNKSSLSEKGRQEDAEEYLGFILNGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNKSSLSEKGRQEDAEEYLGFILNGL
480 490 500 510 520 530
550 560 570 580 590 600
pF1KSD HEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQGEGSEDEWEQVGPRNKTSVTRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQGEGSEDEWEQVGPRNKTSVTRQA
540 550 560 570 580 590
610 620 630 640 650 660
pF1KSD DFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVARES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVARES
600 610 620 630 640 650
670 680 690 700 710 720
pF1KSD VQGYTTKTKQEVEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEISKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VQGYTTKTKQEVEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEISKE
660 670 680 690 700 710
730 740 750 760 770 780
pF1KSD LLSPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLSPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQ
720 730 740 750 760 770
790 800
pF1KSD YQVVKPTAERTAYLLYYRRVDLL
:::::::::::::::::::::::
CCDS45 YQVVKPTAERTAYLLYYRRVDLL
780 790
>>CCDS62004.1 USP10 gene_id:9100|Hs108|chr16 (802 aa)
initn: 5251 init1: 5251 opt: 5253 Z-score: 4150.5 bits: 778.8 E(32554): 0
Smith-Waterman score: 5253; 99.5% identity (99.5% similar) in 799 aa overlap (8-803:4-802)
10 20 30 40 50
pF1KSD MKRAAMALHSP---QYIFGDFSPDEFNQFFVTPRSSVELPPYSGTVLCGTQAVDKLPDGQ
: :: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MPWLPSPGIGQYIFGDFSPDEFNQFFVTPRSSVELPPYSGTVLCGTQAVDKLPDGQ
10 20 30 40 50
60 70 80 90 100 110
pF1KSD EYQRIEFGVDEVIEPSDTLPRTPSYSISSTLNPQAPEFILGCTASKITPDGITKEASYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EYQRIEFGVDEVIEPSDTLPRTPSYSISSTLNPQAPEFILGCTASKITPDGITKEASYGS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KSD IDCQYPGSALALDGSSNVEAEVLENDGVSGGLGQRERKKKKKRPPGYYSYLKDGGDDSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 IDCQYPGSALALDGSSNVEAEVLENDGVSGGLGQRERKKKKKRPPGYYSYLKDGGDDSIS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD TEALVNGHANSAVPNSVSAEDAEFMGDMPPSVTPRTCNSPQNSTDSVSDIVPDSPFPGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TEALVNGHANSAVPNSVSAEDAEFMGDMPPSVTPRTCNSPQNSTDSVSDIVPDSPFPGAL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KSD GSDTRTAGQPEGGPGADFGQSCFPAEAGRDTLSRTAGAQPCVGTDTTENLGVANGQILES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GSDTRTAGQPEGGPGADFGQSCFPAEAGRDTLSRTAGAQPCVGTDTTENLGVANGQILES
240 250 260 270 280 290
300 310 320 330 340 350
pF1KSD SGEGTATNGVELHTTESIDLDPTKPESASPPADGTGSASGTLPVSQPKSWASLFHDSKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SGEGTATNGVELHTTESIDLDPTKPESASPPADGTGSASGTLPVSQPKSWASLFHDSKPS
300 310 320 330 340 350
360 370 380 390 400 410
pF1KSD SSSPVAYVETKYSPPAISPLVSEKQVEVKEGLVPVSEDPVAIKIAELLENVTLIHKPVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SSSPVAYVETKYSPPAISPLVSEKQVEVKEGLVPVSEDPVAIKIAELLENVTLIHKPVSL
360 370 380 390 400 410
420 430 440 450 460 470
pF1KSD QPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEF
420 430 440 450 460 470
480 490 500 510 520 530
pF1KSD TNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNKSSLSEKGRQEDAEEYLGFIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNKSSLSEKGRQEDAEEYLGFIL
480 490 500 510 520 530
540 550 560 570 580 590
pF1KSD NGLHEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQGEGSEDEWEQVGPRNKTSVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 NGLHEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQGEGSEDEWEQVGPRNKTSVT
540 550 560 570 580 590
600 610 620 630 640 650
pF1KSD RQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVA
600 610 620 630 640 650
660 670 680 690 700 710
pF1KSD RESVQGYTTKTKQEVEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RESVQGYTTKTKQEVEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEI
660 670 680 690 700 710
720 730 740 750 760 770
pF1KSD SKELLSPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SKELLSPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKV
720 730 740 750 760 770
780 790 800
pF1KSD INQYQVVKPTAERTAYLLYYRRVDLL
::::::::::::::::::::::::::
CCDS62 INQYQVVKPTAERTAYLLYYRRVDLL
780 790 800
803 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:33:04 2016 done: Thu Nov 3 00:33:04 2016
Total Scan time: 3.450 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]