FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0186, 196 aa
  1>>>pF1KSDA0186 196 - 196 aa - 196 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9993+/-0.000322; mu= 14.6089+/- 0.020
 mean_var=58.5900+/-11.539, 0's: 0 Z-trim(115.2): 24  B-trim: 26 in 1/55
 Lambda= 0.167557
 statistics sampled from 25546 (25562) to 25546 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.3), width:  16
 Scan time:  5.330

The best scores are:                                      opt bits E(85289)
NP_066545 (OMIM: 610608) DNA replication complex G ( 196) 1330 329.4 2.3e-90
XP_016883651 (OMIM: 610608) PREDICTED: DNA replica ( 161) 1093 272.1 3.4e-73


>>NP_066545 (OMIM: 610608) DNA replication complex GINS   (196 aa)
 initn: 1330 init1: 1330 opt: 1330  Z-score: 1743.4  bits: 329.4 E(85289): 2.3e-90
Smith-Waterman score: 1330; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KSD MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 TIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW
              130       140       150       160       170       180

              190      
pF1KSD KCEQLIRQGVLEHILS
       ::::::::::::::::
NP_066 KCEQLIRQGVLEHILS
              190      

>>XP_016883651 (OMIM: 610608) PREDICTED: DNA replication  (161 aa)
 initn: 1093 init1: 1093 opt: 1093  Z-score: 1435.1  bits: 272.1 E(85289): 3.4e-73
Smith-Waterman score: 1093; 100.0% identity (100.0% similar) in 161 aa overlap (36-196:1-161)

          10        20        30        40        50        60     
pF1KSD AMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFR
                                     ::::::::::::::::::::::::::::::
XP_016                               MKALYEQNQSDVNEAKSGGRSDLIPTIKFR
                                             10        20        30

          70        80        90       100       110       120     
pF1KSD HCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYM
               40        50        60        70        80        90

         130       140       150       160       170       180     
pF1KSD RSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQL
              100       110       120       130       140       150

         190      
pF1KSD IRQGVLEHILS
       :::::::::::
XP_016 IRQGVLEHILS
              160 




196 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:32:29 2016 done: Thu Nov  3 00:32:30 2016
 Total Scan time:  5.330 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]