FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0180, 388 aa
  1>>>pF1KSDA0180 388 - 388 aa - 388 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8757+/-0.000738; mu= 19.8981+/- 0.044
 mean_var=71.8065+/-14.298, 0's: 0 Z-trim(109.2): 8  B-trim: 0 in 0/53
 Lambda= 0.151353
 statistics sampled from 10709 (10713) to 10709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.329), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS13198.1 POFUT1 gene_id:23509|Hs108|chr20       ( 388) 2714 601.6  4e-172
CCDS13199.1 POFUT1 gene_id:23509|Hs108|chr20       ( 194) 1305 293.6 9.9e-80


>>CCDS13198.1 POFUT1 gene_id:23509|Hs108|chr20            (388 aa)
 initn: 2714 init1: 2714 opt: 2714  Z-score: 3203.7  bits: 601.6 E(32554): 4e-172
Smith-Waterman score: 2714; 100.0% identity (100.0% similar) in 388 aa overlap (1-388:1-388)

               10        20        30        40        50        60
pF1KSD MGAAAWARPLSVSFLLLLLPLPGMPAGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGAAAWARPLSVSFLLLLLPLPGMPAGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYREQWSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYREQWSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD RFSPKEHPVLALPGAPAQFPVLEEHRPLQKYMVWSDEMVKTGEAQIHAHLVRPYVGIHLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RFSPKEHPVLALPGAPAQFPVLEEHRPLQKYMVWSDEMVKTGEAQIHAHLVRPYVGIHLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IGSDWKNACAMLKDGTAGSHFMASPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IGSDWKNACAMLKDGTAGSHFMASPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LDAQSVYVATDSESYVPELQQLFKGKVKVVSLKPEVAQVDLYILGQADHFIGNCVSSFTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LDAQSVYVATDSESYVPELQQLFKGKVKVVSLKPEVAQVDLYILGQADHFIGNCVSSFTA
              310       320       330       340       350       360

              370       380        
pF1KSD FVKRERDLQGRPSSFFGMDRPPKLRDEF
       ::::::::::::::::::::::::::::
CCDS13 FVKRERDLQGRPSSFFGMDRPPKLRDEF
              370       380        

>>CCDS13199.1 POFUT1 gene_id:23509|Hs108|chr20            (194 aa)
 initn: 1304 init1: 1304 opt: 1305  Z-score: 1544.9  bits: 293.6 E(32554): 9.9e-80
Smith-Waterman score: 1305; 94.8% identity (96.4% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KSD MGAAAWARPLSVSFLLLLLPLPGMPAGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGAAAWARPLSVSFLLLLLPLPGMPAGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYREQWSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYREQWSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD RFSPKEHPVLALPGAPAQFPVLEEHRPLQKYMVWSDEMVKTGEAQIHAHLVRPYVGIHLR
       :   .   .: .:                                               
CCDS13 RRENHSCVTLLFPR                                              
              190                                                  




388 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:29:30 2016 done: Thu Nov  3 00:29:31 2016
 Total Scan time:  2.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]