FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0157, 415 aa
  1>>>pF1KSDA0157 415 - 415 aa - 415 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2043+/-0.000848; mu= 5.7081+/- 0.051
 mean_var=161.9039+/-33.083, 0's: 0 Z-trim(112.5): 6  B-trim: 0 in 0/52
 Lambda= 0.100797
 statistics sampled from 13282 (13286) to 13282 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.408), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS31308.2 FAM175B gene_id:23172|Hs108|chr10      ( 415) 2735 409.2 3.6e-114
CCDS3605.2 FAM175A gene_id:84142|Hs108|chr4        ( 409)  718 115.9 7.1e-26


>>CCDS31308.2 FAM175B gene_id:23172|Hs108|chr10           (415 aa)
 initn: 2735 init1: 2735 opt: 2735  Z-score: 2163.1  bits: 409.2 E(32554): 3.6e-114
Smith-Waterman score: 2735; 99.5% identity (100.0% similar) in 415 aa overlap (1-415:1-415)

               10        20        30        40        50        60
pF1KSD MAASISGYTFSAVCFHSANSNADHEGFLLGEVRQEETFSISDSQISNTEFLQVIQIYNHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:.:::
CCDS31 MAASISGYTFSAVCFHSANSNADHEGFLLGEVRQEETFSISDSQISNTEFLQVIEIHNHQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PCSKLFSFYDYASKVNEESLDRILKDRRKKVIGWYRFRRNTQQQMSYREQVLHKQLTRIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PCSKLFSFYDYASKVNEESLDRILKDRRKKVIGWYRFRRNTQQQMSYREQVLHKQLTRIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GVPDLVFLLFSFISTANNSTHALEYVLFRPNRRYNQRISLAIPNLGNTSQQEYKVSSVPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GVPDLVFLLFSFISTANNSTHALEYVLFRPNRRYNQRISLAIPNLGNTSQQEYKVSSVPN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TSQSYAKVIKEHGTDFFDKDGVMKDIRAIYQVYNALQEKVQAVCADVEKSERVVESCQAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TSQSYAKVIKEHGTDFFDKDGVMKDIRAIYQVYNALQEKVQAVCADVEKSERVVESCQAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VNKLRRQITQRKNEKEQERRLQQAVLSRQMPSESLDPAFSPRMPSSGFAAEGRSTLGDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VNKLRRQITQRKNEKEQERRLQQAVLSRQMPSESLDPAFSPRMPSSGFAAEGRSTLGDAE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ASDPPPPYSDFHPNNQESTLSHSRMERSVFMPRPQAVGSSNYASTSAGLKYPGSGADLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ASDPPPPYSDFHPNNQESTLSHSRMERSVFMPRPQAVGSSNYASTSAGLKYPGSGADLPP
              310       320       330       340       350       360

              370       380       390       400       410     
pF1KSD PQRAAGDSGEDSDDSDYENLIDPTEPSNSEYSHSKDSRPMAHPDEDPRNTQTSQI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PQRAAGDSGEDSDDSDYENLIDPTEPSNSEYSHSKDSRPMAHPDEDPRNTQTSQI
              370       380       390       400       410     

>>CCDS3605.2 FAM175A gene_id:84142|Hs108|chr4             (409 aa)
 initn: 714 init1: 416 opt: 718  Z-score: 578.0  bits: 115.9 E(32554): 7.1e-26
Smith-Waterman score: 718; 32.3% identity (66.7% similar) in 378 aa overlap (2-374:7-380)

                    10        20        30        40        50     
pF1KSD      MAASISGYTFSAVCFHSANSNADHEGFLLGEVRQEETFSISDSQISNTEFLQVIQ
             .: .::....:. :.  :...: ::::::::. :   ::.:::....: . .:.
CCDS36 MEGESTSAVLSGFVLGALAFQHLNTDSDTEGFLLGEVKGEAKNSITDSQMDDVEVVYTID
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KSD IYNHQPCSKLFSFYDYASKVNEESLDRILKDRRKKVIGWYRFRRNTQQQMSYREQVLHKQ
       : .. :: .:::::. ...:::..: .::.. .:.:.:::.:::...: :..::..:::.
CCDS36 IQKYIPCYQLFSFYNSSGEVNEQALKKILSNVKKNVVGWYKFRRHSDQIMTFRERLLHKN
               70        80        90       100       110       120

         120       130        140       150       160       170    
pF1KSD LTRILGVPDLVFLLFS-FISTANNSTHALEYVLFRPNRRYNQRISLAIPNLGNTSQQEYK
       : . ..  ::::::..  : : . ::: ::. :..:..   .:. :.. ::: . :  ::
CCDS36 LQEHFSNQDLVFLLLTPSIITESCSTHRLEHSLYKPQKGLFHRVPLVVANLGMSEQLGYK
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KSD VSSVPNTSQSYAKVIKEHGTDFFDKDGVMKDIRAIYQVYNALQEKVQAVCADVEKSERVV
       . :    : ....... :.. ::..:: .:... : ..: .:::.....:  :: ::..:
CCDS36 TVSGSCMSTGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAV
              190       200       210       220       230       240

          240       250       260       270         280       290  
pF1KSD ESCQAEVNKLRRQITQRKNEKEQERRLQQAVLSRQMPSES--LDPAFSPRMPSSGFAAEG
       ..   .::.:.:.: .:.. . :  : ..    .. :.:.  :  :.   .:.: :    
CCDS36 DKLVKDVNRLKREIEKRRGAQIQAAREKNI---QKDPQENIFLCQALRTFFPNSEFLHSC
              250       260       270          280       290       

            300       310         320       330       340       350
pF1KSD RSTLGDAEASDPPPPYSDFHP--NNQESTLSHSRMERSVFMPRPQAVGSSNYASTSAGLK
         .: . ..:     :.      .:    . :. . ..     :: . . .  . .   .
CCDS36 VMSLKNRHVSKSSCNYNHHLDVVDNLTLMVEHTDIPEASPASTPQII-KHKALDLDDRWQ
       300       310       320       330       340        350      

              360       370       380       390       400       410
pF1KSD YPGSGADLPPPQRAAGDSGEDSDDSDYENLIDPTEPSNSEYSHSKDSRPMAHPDEDPRNT
       .  :       .:. .:.: ...:                                    
CCDS36 FKRSRLLDTQDKRSKADTGSSNQDKASKMSSPETDEEIEKMKGFGEYSRSPTF       
        360       370       380       390       400                




415 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:20:05 2016 done: Thu Nov  3 00:20:06 2016
 Total Scan time:  2.580 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]