Result of FASTA (omim) for
pF1KSDA0155
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0155, 1173 aa
1>>>pF1KSDA0155 1173 - 1173 aa - 1173 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.6125+/-0.000554; mu= -11.4873+/- 0.035
mean_var=423.1457+/-84.876, 0's: 0 Z-trim(119.2): 41 B-trim: 1162 in 1/55
Lambda= 0.062349
statistics sampled from 33019 (33067) to 33019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.388), width: 16
Scan time: 14.550
The best scores are: opt bits E(85289)
NP_055448 (OMIM: 609366) RNA polymerase-associated (1173) 7744 712.2 4.8e-204
NP_001333208 (OMIM: 609366) RNA polymerase-associa (1149) 5511 511.3 1.4e-143
>>NP_055448 (OMIM: 609366) RNA polymerase-associated pro (1173 aa)
initn: 7744 init1: 7744 opt: 7744 Z-score: 3784.3 bits: 712.2 E(85289): 4.8e-204
Smith-Waterman score: 7744; 100.0% identity (100.0% similar) in 1173 aa overlap (1-1173:1-1173)
10 20 30 40 50 60
pF1KSD MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEEF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD NAVKELELAHRYFSYLSKVGDKMRFDLALAATEARQCSDLLSQAQYHVARARKQDEEERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NAVKELELAHRYFSYLSKVGDKMRFDLALAATEARQCSDLLSQAQYHVARARKQDEEERE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD LRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGETEATKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGETEATKE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD KKRGGGGGRRSKKGGEFDEFVNDDTDDDLPISKKKKRRKGSGSEQEGEDEEGGERKKKKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KKRGGGGGRRSKKGGEFDEFVNDDTDDDLPISKKKKRRKGSGSEQEGEDEEGGERKKKKR
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD RRHPKGEEGSDDDETENGPKPKKRRPPKAEKKKAPKPERLPPSMKGKIKSKAIISSSDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RRHPKGEEGSDDDETENGPKPKKRRPPKAEKKKAPKPERLPPSMKGKIKSKAIISSSDDS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD SDEDKLKIADEGHPRNSNSNSDSDEDEQRKKCASSESDSDENQNKSGSEAGSPRRPRRQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SDEDKLKIADEGHPRNSNSNSDSDEDEQRKKCASSESDSDENQNKSGSEAGSPRRPRRQR
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD SDQDSDSDQPSRKRRPSGSEQSDNESVQSGRSHSGVSENDSRPASPSAESDHESERGSDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SDQDSDSDQPSRKRRPSGSEQSDNESVQSGRSHSGVSENDSRPASPSAESDHESERGSDN
1090 1100 1110 1120 1130 1140
1150 1160 1170
pF1KSD EGSGQGSGNESEPEGSNNEASDRGSEHGSDDSD
:::::::::::::::::::::::::::::::::
NP_055 EGSGQGSGNESEPEGSNNEASDRGSEHGSDDSD
1150 1160 1170
>>NP_001333208 (OMIM: 609366) RNA polymerase-associated (1149 aa)
initn: 5747 init1: 5316 opt: 5511 Z-score: 2698.8 bits: 511.3 E(85289): 1.4e-143
Smith-Waterman score: 7536; 98.0% identity (98.0% similar) in 1173 aa overlap (1-1173:1-1149)
10 20 30 40 50 60
pF1KSD MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEEF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD NAVKELELAHRYFSYLSKVGDKMRFDLALAATEARQCSDLLSQAQYHVARARKQDEEERE
::::::::::: :::::::::::::::::::::::::
NP_001 NAVKELELAHR------------------------QCSDLLSQAQYHVARARKQDEEERE
790 800 810
850 860 870 880 890 900
pF1KSD LRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGETEATKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGETEATKE
820 830 840 850 860 870
910 920 930 940 950 960
pF1KSD KKRGGGGGRRSKKGGEFDEFVNDDTDDDLPISKKKKRRKGSGSEQEGEDEEGGERKKKKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKRGGGGGRRSKKGGEFDEFVNDDTDDDLPISKKKKRRKGSGSEQEGEDEEGGERKKKKR
880 890 900 910 920 930
970 980 990 1000 1010 1020
pF1KSD RRHPKGEEGSDDDETENGPKPKKRRPPKAEKKKAPKPERLPPSMKGKIKSKAIISSSDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRHPKGEEGSDDDETENGPKPKKRRPPKAEKKKAPKPERLPPSMKGKIKSKAIISSSDDS
940 950 960 970 980 990
1030 1040 1050 1060 1070 1080
pF1KSD SDEDKLKIADEGHPRNSNSNSDSDEDEQRKKCASSESDSDENQNKSGSEAGSPRRPRRQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDEDKLKIADEGHPRNSNSNSDSDEDEQRKKCASSESDSDENQNKSGSEAGSPRRPRRQR
1000 1010 1020 1030 1040 1050
1090 1100 1110 1120 1130 1140
pF1KSD SDQDSDSDQPSRKRRPSGSEQSDNESVQSGRSHSGVSENDSRPASPSAESDHESERGSDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDQDSDSDQPSRKRRPSGSEQSDNESVQSGRSHSGVSENDSRPASPSAESDHESERGSDN
1060 1070 1080 1090 1100 1110
1150 1160 1170
pF1KSD EGSGQGSGNESEPEGSNNEASDRGSEHGSDDSD
:::::::::::::::::::::::::::::::::
NP_001 EGSGQGSGNESEPEGSNNEASDRGSEHGSDDSD
1120 1130 1140
1173 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:19:29 2016 done: Thu Nov 3 00:19:31 2016
Total Scan time: 14.550 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]