FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0155, 1173 aa
  1>>>pF1KSDA0155 1173 - 1173 aa - 1173 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4219+/-0.00136; mu= -3.9796+/- 0.082
 mean_var=365.1722+/-73.855, 0's: 0 Z-trim(111.3): 41  B-trim: 323 in 1/52
 Lambda= 0.067116
 statistics sampled from 12274 (12302) to 12274 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.378), width:  16
 Scan time:  5.340

The best scores are:                                      opt bits E(32554)
CCDS7805.1 CTR9 gene_id:9646|Hs108|chr11           (1173) 7744 765.0       0


>>CCDS7805.1 CTR9 gene_id:9646|Hs108|chr11                (1173 aa)
 initn: 7744 init1: 7744 opt: 7744  Z-score: 4069.9  bits: 765.0 E(32554):    0
Smith-Waterman score: 7744; 100.0% identity (100.0% similar) in 1173 aa overlap (1-1173:1-1173)

               10        20        30        40        50        60
pF1KSD MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD NAVKELELAHRYFSYLSKVGDKMRFDLALAATEARQCSDLLSQAQYHVARARKQDEEERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NAVKELELAHRYFSYLSKVGDKMRFDLALAATEARQCSDLLSQAQYHVARARKQDEEERE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD LRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGETEATKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGETEATKE
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD KKRGGGGGRRSKKGGEFDEFVNDDTDDDLPISKKKKRRKGSGSEQEGEDEEGGERKKKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KKRGGGGGRRSKKGGEFDEFVNDDTDDDLPISKKKKRRKGSGSEQEGEDEEGGERKKKKR
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD RRHPKGEEGSDDDETENGPKPKKRRPPKAEKKKAPKPERLPPSMKGKIKSKAIISSSDDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RRHPKGEEGSDDDETENGPKPKKRRPPKAEKKKAPKPERLPPSMKGKIKSKAIISSSDDS
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD SDEDKLKIADEGHPRNSNSNSDSDEDEQRKKCASSESDSDENQNKSGSEAGSPRRPRRQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SDEDKLKIADEGHPRNSNSNSDSDEDEQRKKCASSESDSDENQNKSGSEAGSPRRPRRQR
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD SDQDSDSDQPSRKRRPSGSEQSDNESVQSGRSHSGVSENDSRPASPSAESDHESERGSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SDQDSDSDQPSRKRRPSGSEQSDNESVQSGRSHSGVSENDSRPASPSAESDHESERGSDN
             1090      1100      1110      1120      1130      1140

             1150      1160      1170   
pF1KSD EGSGQGSGNESEPEGSNNEASDRGSEHGSDDSD
       :::::::::::::::::::::::::::::::::
CCDS78 EGSGQGSGNESEPEGSNNEASDRGSEHGSDDSD
             1150      1160      1170   




1173 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:19:28 2016 done: Thu Nov  3 00:19:29 2016
 Total Scan time:  5.340 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]