Result of FASTA (omim) for
pF1KSDA0152
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0152, 292 aa
1>>>pF1KSDA0152 292 - 292 aa - 292 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3711+/-0.000297; mu= 11.1188+/- 0.019
mean_var=88.3997+/-17.819, 0's: 0 Z-trim(118.8): 8 B-trim: 116 in 1/49
Lambda= 0.136411
statistics sampled from 32037 (32043) to 32037 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.376), width: 16
Scan time: 6.910
The best scores are: opt bits E(85289)
NP_055545 (OMIM: 613802) malectin isoform1 precurs ( 292) 1946 392.3 5.9e-109
XP_011537334 (OMIM: 613802) PREDICTED: malectin is ( 209) 1392 283.2 2.9e-76
XP_011537333 (OMIM: 613802) PREDICTED: malectin is ( 209) 1392 283.2 2.9e-76
NP_001290556 (OMIM: 613802) malectin isoform 2 [Ho ( 209) 1392 283.2 2.9e-76
NP_001290557 (OMIM: 613802) malectin isoform 3 pre ( 217) 917 189.7 4.2e-48
>>NP_055545 (OMIM: 613802) malectin isoform1 precursor [ (292 aa)
initn: 1946 init1: 1946 opt: 1946 Z-score: 2077.1 bits: 392.3 E(85289): 5.9e-109
Smith-Waterman score: 1946; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KSD MLGAWAVEGTAVALLRLLLLLLPPAIRGPGLGVAGVAGAAGAGLPESVIWAVNAGGEAHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MLGAWAVEGTAVALLRLLLLLLPPAIRGPGLGVAGVAGAAGAGLPESVIWAVNAGGEAHV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVHGIHFRKDPLEGRVGRASDYGMKLPILRSNPEDQILYQTERYNEETFGYEVPIKEEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DVHGIHFRKDPLEGRVGRASDYGMKLPILRSNPEDQILYQTERYNEETFGYEVPIKEEGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD YVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSIRKGKLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSIRKGKLSV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QGEVSTFTGKLYIEFVKGYYDNPKVCALYIMAGTVDDVPKLQPHPGLEKKEEEEEEEEYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QGEVSTFTGKLYIEFVKGYYDNPKVCALYIMAGTVDDVPKLQPHPGLEKKEEEEEEEEYD
190 200 210 220 230 240
250 260 270 280 290
pF1KSD EGSNLKKQTNKNRVQSGPRTPNPYASDNSSLMFPILVAFGVFIPTLFCLCRL
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EGSNLKKQTNKNRVQSGPRTPNPYASDNSSLMFPILVAFGVFIPTLFCLCRL
250 260 270 280 290
>>XP_011537334 (OMIM: 613802) PREDICTED: malectin isofor (209 aa)
initn: 1392 init1: 1392 opt: 1392 Z-score: 1490.1 bits: 283.2 E(85289): 2.9e-76
Smith-Waterman score: 1392; 100.0% identity (100.0% similar) in 209 aa overlap (84-292:1-209)
60 70 80 90 100 110
pF1KSD AGGEAHVDVHGIHFRKDPLEGRVGRASDYGMKLPILRSNPEDQILYQTERYNEETFGYEV
::::::::::::::::::::::::::::::
XP_011 MKLPILRSNPEDQILYQTERYNEETFGYEV
10 20 30
120 130 140 150 160 170
pF1KSD PIKEEGDYVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PIKEEGDYVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSI
40 50 60 70 80 90
180 190 200 210 220 230
pF1KSD RKGKLSVQGEVSTFTGKLYIEFVKGYYDNPKVCALYIMAGTVDDVPKLQPHPGLEKKEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKGKLSVQGEVSTFTGKLYIEFVKGYYDNPKVCALYIMAGTVDDVPKLQPHPGLEKKEEE
100 110 120 130 140 150
240 250 260 270 280 290
pF1KSD EEEEEYDEGSNLKKQTNKNRVQSGPRTPNPYASDNSSLMFPILVAFGVFIPTLFCLCRL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEEEEYDEGSNLKKQTNKNRVQSGPRTPNPYASDNSSLMFPILVAFGVFIPTLFCLCRL
160 170 180 190 200
>>XP_011537333 (OMIM: 613802) PREDICTED: malectin isofor (209 aa)
initn: 1392 init1: 1392 opt: 1392 Z-score: 1490.1 bits: 283.2 E(85289): 2.9e-76
Smith-Waterman score: 1392; 100.0% identity (100.0% similar) in 209 aa overlap (84-292:1-209)
60 70 80 90 100 110
pF1KSD AGGEAHVDVHGIHFRKDPLEGRVGRASDYGMKLPILRSNPEDQILYQTERYNEETFGYEV
::::::::::::::::::::::::::::::
XP_011 MKLPILRSNPEDQILYQTERYNEETFGYEV
10 20 30
120 130 140 150 160 170
pF1KSD PIKEEGDYVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PIKEEGDYVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSI
40 50 60 70 80 90
180 190 200 210 220 230
pF1KSD RKGKLSVQGEVSTFTGKLYIEFVKGYYDNPKVCALYIMAGTVDDVPKLQPHPGLEKKEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKGKLSVQGEVSTFTGKLYIEFVKGYYDNPKVCALYIMAGTVDDVPKLQPHPGLEKKEEE
100 110 120 130 140 150
240 250 260 270 280 290
pF1KSD EEEEEYDEGSNLKKQTNKNRVQSGPRTPNPYASDNSSLMFPILVAFGVFIPTLFCLCRL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEEEEYDEGSNLKKQTNKNRVQSGPRTPNPYASDNSSLMFPILVAFGVFIPTLFCLCRL
160 170 180 190 200
>>NP_001290556 (OMIM: 613802) malectin isoform 2 [Homo s (209 aa)
initn: 1392 init1: 1392 opt: 1392 Z-score: 1490.1 bits: 283.2 E(85289): 2.9e-76
Smith-Waterman score: 1392; 100.0% identity (100.0% similar) in 209 aa overlap (84-292:1-209)
60 70 80 90 100 110
pF1KSD AGGEAHVDVHGIHFRKDPLEGRVGRASDYGMKLPILRSNPEDQILYQTERYNEETFGYEV
::::::::::::::::::::::::::::::
NP_001 MKLPILRSNPEDQILYQTERYNEETFGYEV
10 20 30
120 130 140 150 160 170
pF1KSD PIKEEGDYVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PIKEEGDYVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSI
40 50 60 70 80 90
180 190 200 210 220 230
pF1KSD RKGKLSVQGEVSTFTGKLYIEFVKGYYDNPKVCALYIMAGTVDDVPKLQPHPGLEKKEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKGKLSVQGEVSTFTGKLYIEFVKGYYDNPKVCALYIMAGTVDDVPKLQPHPGLEKKEEE
100 110 120 130 140 150
240 250 260 270 280 290
pF1KSD EEEEEYDEGSNLKKQTNKNRVQSGPRTPNPYASDNSSLMFPILVAFGVFIPTLFCLCRL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEEEEYDEGSNLKKQTNKNRVQSGPRTPNPYASDNSSLMFPILVAFGVFIPTLFCLCRL
160 170 180 190 200
>>NP_001290557 (OMIM: 613802) malectin isoform 3 precurs (217 aa)
initn: 917 init1: 917 opt: 917 Z-score: 984.7 bits: 189.7 E(85289): 4.2e-48
Smith-Waterman score: 917; 98.6% identity (100.0% similar) in 140 aa overlap (1-140:1-140)
10 20 30 40 50 60
pF1KSD MLGAWAVEGTAVALLRLLLLLLPPAIRGPGLGVAGVAGAAGAGLPESVIWAVNAGGEAHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLGAWAVEGTAVALLRLLLLLLPPAIRGPGLGVAGVAGAAGAGLPESVIWAVNAGGEAHV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DVHGIHFRKDPLEGRVGRASDYGMKLPILRSNPEDQILYQTERYNEETFGYEVPIKEEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVHGIHFRKDPLEGRVGRASDYGMKLPILRSNPEDQILYQTERYNEETFGYEVPIKEEGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD YVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSIRKGKLSV
::::::::::::::::::..
NP_001 YVLVLKFAEVYFAQSQQKMYQSFSLIRDWRRKKRKKKKKNMMKGLISKNRPIRTGCSQAP
130 140 150 160 170 180
292 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:17:28 2016 done: Thu Nov 3 00:17:29 2016
Total Scan time: 6.910 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]