FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0152, 292 aa
  1>>>pF1KSDA0152 292 - 292 aa - 292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4425+/-0.000693; mu= 10.5172+/- 0.042
 mean_var=84.1370+/-17.044, 0's: 0 Z-trim(112.2): 4  B-trim: 275 in 1/49
 Lambda= 0.139824
 statistics sampled from 12971 (12974) to 12971 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.399), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS9206.1 MLEC gene_id:9761|Hs108|chr12           ( 292) 1946 401.6 3.6e-112
CCDS76609.1 MLEC gene_id:9761|Hs108|chr12          ( 217)  917 194.0 8.3e-50


>>CCDS9206.1 MLEC gene_id:9761|Hs108|chr12                (292 aa)
 initn: 1946 init1: 1946 opt: 1946  Z-score: 2127.4  bits: 401.6 E(32554): 3.6e-112
Smith-Waterman score: 1946; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KSD MLGAWAVEGTAVALLRLLLLLLPPAIRGPGLGVAGVAGAAGAGLPESVIWAVNAGGEAHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MLGAWAVEGTAVALLRLLLLLLPPAIRGPGLGVAGVAGAAGAGLPESVIWAVNAGGEAHV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DVHGIHFRKDPLEGRVGRASDYGMKLPILRSNPEDQILYQTERYNEETFGYEVPIKEEGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 DVHGIHFRKDPLEGRVGRASDYGMKLPILRSNPEDQILYQTERYNEETFGYEVPIKEEGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSIRKGKLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 YVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSIRKGKLSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QGEVSTFTGKLYIEFVKGYYDNPKVCALYIMAGTVDDVPKLQPHPGLEKKEEEEEEEEYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 QGEVSTFTGKLYIEFVKGYYDNPKVCALYIMAGTVDDVPKLQPHPGLEKKEEEEEEEEYD
              190       200       210       220       230       240

              250       260       270       280       290  
pF1KSD EGSNLKKQTNKNRVQSGPRTPNPYASDNSSLMFPILVAFGVFIPTLFCLCRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 EGSNLKKQTNKNRVQSGPRTPNPYASDNSSLMFPILVAFGVFIPTLFCLCRL
              250       260       270       280       290  

>>CCDS76609.1 MLEC gene_id:9761|Hs108|chr12               (217 aa)
 initn: 917 init1: 917 opt: 917  Z-score: 1007.6  bits: 194.0 E(32554): 8.3e-50
Smith-Waterman score: 917; 98.6% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KSD MLGAWAVEGTAVALLRLLLLLLPPAIRGPGLGVAGVAGAAGAGLPESVIWAVNAGGEAHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MLGAWAVEGTAVALLRLLLLLLPPAIRGPGLGVAGVAGAAGAGLPESVIWAVNAGGEAHV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DVHGIHFRKDPLEGRVGRASDYGMKLPILRSNPEDQILYQTERYNEETFGYEVPIKEEGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DVHGIHFRKDPLEGRVGRASDYGMKLPILRSNPEDQILYQTERYNEETFGYEVPIKEEGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YVLVLKFAEVYFAQSQQKVFDVRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSIRKGKLSV
       ::::::::::::::::::..                                        
CCDS76 YVLVLKFAEVYFAQSQQKMYQSFSLIRDWRRKKRKKKKKNMMKGLISKNRPIRTGCSQAP
              130       140       150       160       170       180




292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:17:27 2016 done: Thu Nov  3 00:17:27 2016
 Total Scan time:  2.090 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]