Result of FASTA (omim) for
pF1KSDA0146
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0146, 915 aa
1>>>pF1KSDA0146 915 - 915 aa - 915 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4135+/-0.000367; mu= 22.0929+/- 0.023
mean_var=93.2905+/-17.992, 0's: 0 Z-trim(115.7): 41 B-trim: 0 in 0/52
Lambda= 0.132787
statistics sampled from 26279 (26320) to 26279 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.309), width: 16
Scan time: 11.300
The best scores are: opt bits E(85289)
NP_001073863 (OMIM: 615384) DNA repair-scaffolding ( 915) 6118 1182.9 0
XP_011515799 (OMIM: 615384) PREDICTED: DNA repair- ( 895) 5825 1126.8 0
XP_005251246 (OMIM: 615384) PREDICTED: DNA repair- ( 883) 5713 1105.3 0
XP_016868757 (OMIM: 615384) PREDICTED: DNA repair- ( 936) 5713 1105.4 0
XP_006716506 (OMIM: 615384) PREDICTED: DNA repair- ( 855) 5674 1097.8 0
NP_001269845 (OMIM: 615384) DNA repair-scaffolding ( 845) 5531 1070.4 0
XP_005251250 (OMIM: 615384) PREDICTED: DNA repair- ( 815) 5438 1052.6 0
XP_016868760 (OMIM: 615384) PREDICTED: DNA repair- ( 876) 5269 1020.3 0
NP_001269848 (OMIM: 615384) DNA repair-scaffolding ( 876) 5269 1020.3 0
XP_005251248 (OMIM: 615384) PREDICTED: DNA repair- ( 848) 5203 1007.6 0
XP_016868766 (OMIM: 615384) PREDICTED: DNA repair- ( 755) 4994 967.5 0
XP_011515802 (OMIM: 615384) PREDICTED: DNA repair- ( 875) 4964 961.8 0
XP_005251252 (OMIM: 615384) PREDICTED: DNA repair- ( 751) 4946 958.3 0
XP_016868767 (OMIM: 615384) PREDICTED: DNA repair- ( 751) 4946 958.3 0
XP_016868759 (OMIM: 615384) PREDICTED: DNA repair- ( 896) 4559 884.3 0
XP_016868761 (OMIM: 615384) PREDICTED: DNA repair- ( 791) 4548 882.1 0
XP_016868764 (OMIM: 615384) PREDICTED: DNA repair- ( 770) 4541 880.8 0
XP_016868763 (OMIM: 615384) PREDICTED: DNA repair- ( 772) 4541 880.8 0
XP_016868765 (OMIM: 615384) PREDICTED: DNA repair- ( 762) 4540 880.6 0
XP_005251255 (OMIM: 615384) PREDICTED: DNA repair- ( 665) 4413 856.2 0
XP_006716507 (OMIM: 615384) PREDICTED: DNA repair- ( 665) 4413 856.2 0
XP_016868758 (OMIM: 615384) PREDICTED: DNA repair- ( 916) 4299 834.5 0
XP_016868773 (OMIM: 615384) PREDICTED: DNA repair- ( 651) 4266 828.0 0
XP_016868772 (OMIM: 615384) PREDICTED: DNA repair- ( 664) 4260 826.9 0
XP_016868768 (OMIM: 615384) PREDICTED: DNA repair- ( 717) 4260 826.9 0
XP_005251256 (OMIM: 615384) PREDICTED: DNA repair- ( 604) 4064 789.3 0
XP_016868771 (OMIM: 615384) PREDICTED: DNA repair- ( 684) 4031 783.0 0
XP_016868774 (OMIM: 615384) PREDICTED: DNA repair- ( 633) 4008 778.6 0
XP_016868770 (OMIM: 615384) PREDICTED: DNA repair- ( 686) 4008 778.6 0
XP_016868769 (OMIM: 615384) PREDICTED: DNA repair- ( 686) 4008 778.6 0
XP_016868777 (OMIM: 615384) PREDICTED: DNA repair- ( 559) 3701 719.7 9.7e-207
XP_016868775 (OMIM: 615384) PREDICTED: DNA repair- ( 625) 3659 711.7 2.8e-204
XP_016868779 (OMIM: 615384) PREDICTED: DNA repair- ( 504) 3384 658.9 1.7e-188
XP_016868780 (OMIM: 615384) PREDICTED: DNA repair- ( 499) 3347 651.8 2.3e-186
XP_016868762 (OMIM: 615384) PREDICTED: DNA repair- ( 779) 3300 643.0 1.6e-183
XP_016868778 (OMIM: 615384) PREDICTED: DNA repair- ( 527) 3296 642.1 2.1e-183
XP_016868776 (OMIM: 615384) PREDICTED: DNA repair- ( 580) 3296 642.1 2.3e-183
XP_011515809 (OMIM: 615384) PREDICTED: DNA repair- ( 390) 2616 511.7 2.8e-144
>>NP_001073863 (OMIM: 615384) DNA repair-scaffolding pro (915 aa)
initn: 6118 init1: 6118 opt: 6118 Z-score: 6332.3 bits: 1182.9 E(85289): 0
Smith-Waterman score: 6118; 100.0% identity (100.0% similar) in 915 aa overlap (1-915:1-915)
10 20 30 40 50 60
pF1KSD MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD SRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGL
850 860 870 880 890 900
910
pF1KSD EEIELLSAGGASAEH
:::::::::::::::
NP_001 EEIELLSAGGASAEH
910
>>XP_011515799 (OMIM: 615384) PREDICTED: DNA repair-scaf (895 aa)
initn: 5865 init1: 5824 opt: 5825 Z-score: 6029.0 bits: 1126.8 E(85289): 0
Smith-Waterman score: 5825; 99.1% identity (99.4% similar) in 879 aa overlap (1-876:1-879)
10 20 30 40 50 60
pF1KSD MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
790 800 810 820 830 840
850 860 870 880 890
pF1KSD SRPQCRVKVKLLQRSISSLLRFAAGEDGSYE---VKSVLGKEVGLLNCFVQSVTAHPTSC
:::::::::::::::::::::::::::: : ..:.:
XP_011 SRPQCRVKVKLLQRSISSLLRFAAGEDGLYSQWLIRSLLRIWKEADRRWVPEGPG
850 860 870 880 890
900 910
pF1KSD IGLEEIELLSAGGASAEH
>>XP_005251246 (OMIM: 615384) PREDICTED: DNA repair-scaf (883 aa)
initn: 5713 init1: 5713 opt: 5713 Z-score: 5913.1 bits: 1105.3 E(85289): 0
Smith-Waterman score: 5713; 99.6% identity (99.8% similar) in 854 aa overlap (1-854:1-854)
10 20 30 40 50 60
pF1KSD MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD SRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGL
::::::::::. :
XP_005 SRPQCRVKVKVGARPEHARTPSSLQHSEAVAAQHFLPAEVCRR
850 860 870 880
>>XP_016868757 (OMIM: 615384) PREDICTED: DNA repair-scaf (936 aa)
initn: 5752 init1: 5711 opt: 5713 Z-score: 5912.8 bits: 1105.4 E(85289): 0
Smith-Waterman score: 5713; 99.6% identity (99.8% similar) in 854 aa overlap (1-854:1-854)
10 20 30 40 50 60
pF1KSD MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD SRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGL
::::::::::. :
XP_016 SRPQCRVKVKVGARPEHARTPSSLQHSEELRSEECPRKGSGVVKLFCPVRNRPPDQLHWI
850 860 870 880 890 900
>>XP_006716506 (OMIM: 615384) PREDICTED: DNA repair-scaf (855 aa)
initn: 5674 init1: 5674 opt: 5674 Z-score: 5873.0 bits: 1097.8 E(85289): 0
Smith-Waterman score: 5674; 100.0% identity (100.0% similar) in 852 aa overlap (64-915:4-855)
40 50 60 70 80 90
pF1KSD AGLRTAGAAASLSEAWLRCGEGFQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKST
::::::::::::::::::::::::::::::
XP_006 MAQSLTAEEKTITEKHLELCPRPKQETTTSKST
10 20 30
100 110 120 130 140 150
pF1KSD SGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEIS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD DCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD SDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRE
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD RSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVA
220 230 240 250 260 270
340 350 360 370 380 390
pF1KSD PRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKED
280 290 300 310 320 330
400 410 420 430 440 450
pF1KSD SEKTCEVYCPDIPLPRRSISLAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SEKTCEVYCPDIPLPRRSISLAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQ
340 350 360 370 380 390
460 470 480 490 500 510
pF1KSD RIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAG
400 410 420 430 440 450
520 530 540 550 560 570
pF1KSD TRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTL
460 470 480 490 500 510
580 590 600 610 620 630
pF1KSD WPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRC
520 530 540 550 560 570
640 650 660 670 680 690
pF1KSD LRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKT
580 590 600 610 620 630
700 710 720 730 740 750
pF1KSD LLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGA
640 650 660 670 680 690
760 770 780 790 800 810
pF1KSD SSCELPGPVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSCELPGPVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRG
700 710 720 730 740 750
820 830 840 850 860 870
pF1KSD AFSCGDCSRVVTSPVLKRHLQVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AFSCGDCSRVVTSPVLKRHLQVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVK
760 770 780 790 800 810
880 890 900 910
pF1KSD SVLGKEVGLLNCFVQSVTAHPTSCIGLEEIELLSAGGASAEH
::::::::::::::::::::::::::::::::::::::::::
XP_006 SVLGKEVGLLNCFVQSVTAHPTSCIGLEEIELLSAGGASAEH
820 830 840 850
>>NP_001269845 (OMIM: 615384) DNA repair-scaffolding pro (845 aa)
initn: 5531 init1: 5531 opt: 5531 Z-score: 5725.0 bits: 1070.4 E(85289): 0
Smith-Waterman score: 5531; 99.8% identity (100.0% similar) in 832 aa overlap (84-915:14-845)
60 70 80 90 100 110
pF1KSD EGFQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDK
..::::::::::::::::::::::::::::
NP_001 MAQVWRRVSEHFWESETTTSKSTSGLTDITWSSSGSDLSDEDK
10 20 30 40
120 130 140 150 160 170
pF1KSD TLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSEL
50 60 70 80 90 100
180 190 200 210 220 230
pF1KSD PKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTET
110 120 130 140 150 160
240 250 260 270 280 290
pF1KSD ILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSG
170 180 190 200 210 220
300 310 320 330 340 350
pF1KSD RKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLR
230 240 250 260 270 280
360 370 380 390 400 410
pF1KSD GRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSIS
290 300 310 320 330 340
420 430 440 450 460 470
pF1KSD LAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQG
350 360 370 380 390 400
480 490 500 510 520 530
pF1KSD AASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLE
410 420 430 440 450 460
540 550 560 570 580 590
pF1KSD FTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIK
470 480 490 500 510 520
600 610 620 630 640 650
pF1KSD THLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 THLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATV
530 540 550 560 570 580
660 670 680 690 700 710
pF1KSD IYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALA
590 600 610 620 630 640
720 730 740 750 760 770
pF1KSD GAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPV
650 660 670 680 690 700
780 790 800 810 820 830
pF1KSD NSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHL
710 720 730 740 750 760
840 850 860 870 880 890
pF1KSD QVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAH
770 780 790 800 810 820
900 910
pF1KSD PTSCIGLEEIELLSAGGASAEH
::::::::::::::::::::::
NP_001 PTSCIGLEEIELLSAGGASAEH
830 840
>>XP_005251250 (OMIM: 615384) PREDICTED: DNA repair-scaf (815 aa)
initn: 5438 init1: 5438 opt: 5438 Z-score: 5628.9 bits: 1052.6 E(85289): 0
Smith-Waterman score: 5438; 100.0% identity (100.0% similar) in 812 aa overlap (1-812:1-812)
10 20 30 40 50 60
pF1KSD MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
::::::::::::::::::::::::::::::::
XP_005 GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRATK
790 800 810
850 860 870 880 890 900
pF1KSD SRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGL
>>XP_016868760 (OMIM: 615384) PREDICTED: DNA repair-scaf (876 aa)
initn: 5308 init1: 5267 opt: 5269 Z-score: 5453.5 bits: 1020.3 E(85289): 0
Smith-Waterman score: 5269; 99.6% identity (99.7% similar) in 791 aa overlap (64-854:4-794)
40 50 60 70 80 90
pF1KSD AGLRTAGAAASLSEAWLRCGEGFQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKST
::::::::::::::::::::::::::::::
XP_016 MAQSLTAEEKTITEKHLELCPRPKQETTTSKST
10 20 30
100 110 120 130 140 150
pF1KSD SGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEIS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD DCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD SDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRE
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD RSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVA
220 230 240 250 260 270
340 350 360 370 380 390
pF1KSD PRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKED
280 290 300 310 320 330
400 410 420 430 440 450
pF1KSD SEKTCEVYCPDIPLPRRSISLAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEKTCEVYCPDIPLPRRSISLAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQ
340 350 360 370 380 390
460 470 480 490 500 510
pF1KSD RIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAG
400 410 420 430 440 450
520 530 540 550 560 570
pF1KSD TRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTL
460 470 480 490 500 510
580 590 600 610 620 630
pF1KSD WPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRC
520 530 540 550 560 570
640 650 660 670 680 690
pF1KSD LRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKT
580 590 600 610 620 630
700 710 720 730 740 750
pF1KSD LLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGA
640 650 660 670 680 690
760 770 780 790 800 810
pF1KSD SSCELPGPVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSCELPGPVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRG
700 710 720 730 740 750
820 830 840 850 860 870
pF1KSD AFSCGDCSRVVTSPVLKRHLQVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVK
:::::::::::::::::::::::::::::::::::::. :
XP_016 AFSCGDCSRVVTSPVLKRHLQVFLDCRSRPQCRVKVKVGARPEHARTPSSLQHSEELRSE
760 770 780 790 800 810
880 890 900 910
pF1KSD SVLGKEVGLLNCFVQSVTAHPTSCIGLEEIELLSAGGASAEH
XP_016 ECPRKGSGVVKLFCPVRNRPPDQLHWIGGNRASECRRGLCRTLAVAAGSVNFAMWLQGWW
820 830 840 850 860 870
>>NP_001269848 (OMIM: 615384) DNA repair-scaffolding pro (876 aa)
initn: 5308 init1: 5267 opt: 5269 Z-score: 5453.5 bits: 1020.3 E(85289): 0
Smith-Waterman score: 5269; 99.6% identity (99.7% similar) in 791 aa overlap (64-854:4-794)
40 50 60 70 80 90
pF1KSD AGLRTAGAAASLSEAWLRCGEGFQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKST
::::::::::::::::::::::::::::::
NP_001 MAQSLTAEEKTITEKHLELCPRPKQETTTSKST
10 20 30
100 110 120 130 140 150
pF1KSD SGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEIS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD DCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD SDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRE
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD RSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVA
220 230 240 250 260 270
340 350 360 370 380 390
pF1KSD PRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKED
280 290 300 310 320 330
400 410 420 430 440 450
pF1KSD SEKTCEVYCPDIPLPRRSISLAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEKTCEVYCPDIPLPRRSISLAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQ
340 350 360 370 380 390
460 470 480 490 500 510
pF1KSD RIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAG
400 410 420 430 440 450
520 530 540 550 560 570
pF1KSD TRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTL
460 470 480 490 500 510
580 590 600 610 620 630
pF1KSD WPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRC
520 530 540 550 560 570
640 650 660 670 680 690
pF1KSD LRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKT
580 590 600 610 620 630
700 710 720 730 740 750
pF1KSD LLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGA
640 650 660 670 680 690
760 770 780 790 800 810
pF1KSD SSCELPGPVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSCELPGPVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRG
700 710 720 730 740 750
820 830 840 850 860 870
pF1KSD AFSCGDCSRVVTSPVLKRHLQVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVK
:::::::::::::::::::::::::::::::::::::. :
NP_001 AFSCGDCSRVVTSPVLKRHLQVFLDCRSRPQCRVKVKVGARPEHARTPSSLQHSEELRSE
760 770 780 790 800 810
880 890 900 910
pF1KSD SVLGKEVGLLNCFVQSVTAHPTSCIGLEEIELLSAGGASAEH
NP_001 ECPRKGSGVVKLFCPVRNRPPDQLHWIGGNRASECRRGLCRTLAVAAGSVNFAMWLQGWW
820 830 840 850 860 870
>>XP_005251248 (OMIM: 615384) PREDICTED: DNA repair-scaf (848 aa)
initn: 5203 init1: 5203 opt: 5203 Z-score: 5385.4 bits: 1007.6 E(85289): 0
Smith-Waterman score: 5203; 100.0% identity (100.0% similar) in 780 aa overlap (1-780:1-780)
10 20 30 40 50 60
pF1KSD MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
XP_005 ELRSEECPRKGSGVVKLFCPVRNRPPDQLHWIGGNRASECRRGLCRTLAVAAGSVNFAMW
790 800 810 820 830 840
915 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:14:29 2016 done: Thu Nov 3 00:14:30 2016
Total Scan time: 11.300 Total Display time: 0.220
Function used was FASTA [36.3.4 Apr, 2011]