Result of FASTA (ccds) for
pF1KSDA0146
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0146, 915 aa
1>>>pF1KSDA0146 915 - 915 aa - 915 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9057+/-0.000878; mu= 18.8156+/- 0.053
mean_var=89.0391+/-17.588, 0's: 0 Z-trim(108.5): 12 B-trim: 222 in 1/50
Lambda= 0.135920
statistics sampled from 10216 (10222) to 10216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.314), width: 16
Scan time: 3.430
The best scores are: opt bits E(32554)
CCDS43737.1 SPIDR gene_id:23514|Hs108|chr8 ( 915) 6118 1210.3 0
CCDS64891.1 SPIDR gene_id:23514|Hs108|chr8 ( 845) 5531 1095.2 0
CCDS64890.1 SPIDR gene_id:23514|Hs108|chr8 ( 876) 5269 1043.8 0
>>CCDS43737.1 SPIDR gene_id:23514|Hs108|chr8 (915 aa)
initn: 6118 init1: 6118 opt: 6118 Z-score: 6480.1 bits: 1210.3 E(32554): 0
Smith-Waterman score: 6118; 100.0% identity (100.0% similar) in 915 aa overlap (1-915:1-915)
10 20 30 40 50 60
pF1KSD MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKAR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD SRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGL
850 860 870 880 890 900
910
pF1KSD EEIELLSAGGASAEH
:::::::::::::::
CCDS43 EEIELLSAGGASAEH
910
>>CCDS64891.1 SPIDR gene_id:23514|Hs108|chr8 (845 aa)
initn: 5531 init1: 5531 opt: 5531 Z-score: 5858.5 bits: 1095.2 E(32554): 0
Smith-Waterman score: 5531; 99.8% identity (100.0% similar) in 832 aa overlap (84-915:14-845)
60 70 80 90 100 110
pF1KSD EGFQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDK
..::::::::::::::::::::::::::::
CCDS64 MAQVWRRVSEHFWESETTTSKSTSGLTDITWSSSGSDLSDEDK
10 20 30 40
120 130 140 150 160 170
pF1KSD TLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSEL
50 60 70 80 90 100
180 190 200 210 220 230
pF1KSD PKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTET
110 120 130 140 150 160
240 250 260 270 280 290
pF1KSD ILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSG
170 180 190 200 210 220
300 310 320 330 340 350
pF1KSD RKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLR
230 240 250 260 270 280
360 370 380 390 400 410
pF1KSD GRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSIS
290 300 310 320 330 340
420 430 440 450 460 470
pF1KSD LAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQG
350 360 370 380 390 400
480 490 500 510 520 530
pF1KSD AASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 AASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLE
410 420 430 440 450 460
540 550 560 570 580 590
pF1KSD FTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIK
470 480 490 500 510 520
600 610 620 630 640 650
pF1KSD THLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 THLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATV
530 540 550 560 570 580
660 670 680 690 700 710
pF1KSD IYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALA
590 600 610 620 630 640
720 730 740 750 760 770
pF1KSD GAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPV
650 660 670 680 690 700
780 790 800 810 820 830
pF1KSD NSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 NSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHL
710 720 730 740 750 760
840 850 860 870 880 890
pF1KSD QVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 QVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAH
770 780 790 800 810 820
900 910
pF1KSD PTSCIGLEEIELLSAGGASAEH
::::::::::::::::::::::
CCDS64 PTSCIGLEEIELLSAGGASAEH
830 840
>>CCDS64890.1 SPIDR gene_id:23514|Hs108|chr8 (876 aa)
initn: 5308 init1: 5267 opt: 5269 Z-score: 5580.6 bits: 1043.8 E(32554): 0
Smith-Waterman score: 5269; 99.6% identity (99.7% similar) in 791 aa overlap (64-854:4-794)
40 50 60 70 80 90
pF1KSD AGLRTAGAAASLSEAWLRCGEGFQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKST
::::::::::::::::::::::::::::::
CCDS64 MAQSLTAEEKTITEKHLELCPRPKQETTTSKST
10 20 30
100 110 120 130 140 150
pF1KSD SGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEIS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD DCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD SDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRE
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD RSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVA
220 230 240 250 260 270
340 350 360 370 380 390
pF1KSD PRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKED
280 290 300 310 320 330
400 410 420 430 440 450
pF1KSD SEKTCEVYCPDIPLPRRSISLAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SEKTCEVYCPDIPLPRRSISLAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQ
340 350 360 370 380 390
460 470 480 490 500 510
pF1KSD RIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAG
400 410 420 430 440 450
520 530 540 550 560 570
pF1KSD TRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTL
460 470 480 490 500 510
580 590 600 610 620 630
pF1KSD WPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 WPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRC
520 530 540 550 560 570
640 650 660 670 680 690
pF1KSD LRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKT
580 590 600 610 620 630
700 710 720 730 740 750
pF1KSD LLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGA
640 650 660 670 680 690
760 770 780 790 800 810
pF1KSD SSCELPGPVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SSCELPGPVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRG
700 710 720 730 740 750
820 830 840 850 860 870
pF1KSD AFSCGDCSRVVTSPVLKRHLQVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVK
:::::::::::::::::::::::::::::::::::::. :
CCDS64 AFSCGDCSRVVTSPVLKRHLQVFLDCRSRPQCRVKVKVGARPEHARTPSSLQHSEELRSE
760 770 780 790 800 810
880 890 900 910
pF1KSD SVLGKEVGLLNCFVQSVTAHPTSCIGLEEIELLSAGGASAEH
CCDS64 ECPRKGSGVVKLFCPVRNRPPDQLHWIGGNRASECRRGLCRTLAVAAGSVNFAMWLQGWW
820 830 840 850 860 870
915 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:14:28 2016 done: Thu Nov 3 00:14:28 2016
Total Scan time: 3.430 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]