FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0141, 515 aa
  1>>>pF1KSDA0141 515 - 515 aa - 515 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7727+/-0.000798; mu= 12.9730+/- 0.048
 mean_var=122.1998+/-24.234, 0's: 0 Z-trim(112.4): 17  B-trim: 0 in 0/52
 Lambda= 0.116022
 statistics sampled from 13133 (13140) to 13133 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.404), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS4268.1 KIAA0141 gene_id:9812|Hs108|chr5        ( 515) 3516 599.4 3.1e-171


>>CCDS4268.1 KIAA0141 gene_id:9812|Hs108|chr5             (515 aa)
 initn: 3516 init1: 3516 opt: 3516  Z-score: 3187.7  bits: 599.4 E(32554): 3.1e-171
Smith-Waterman score: 3516; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)

               10        20        30        40        50        60
pF1KSD MWRLPGLLGRALPRTLGPSLWRVTPKSTSPDGPQTTSSTLLVPVPNLDRSGPHGPGTSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MWRLPGLLGRALPRTLGPSLWRVTPKSTSPDGPQTTSSTLLVPVPNLDRSGPHGPGTSGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PRSHGWKDAFQWMSSRVSPNTLWDAISWGTLAVLALQLARQIHFQASLPAGPQRVEHCSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PRSHGWKDAFQWMSSRVSPNTLWDAISWGTLAVLALQLARQIHFQASLPAGPQRVEHCSW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD HSPLDRFFSSPLWHPCSSLRQHILPSPDGPAPRHTGLREPRLGQEEASAQPRNFSHNSLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HSPLDRFFSSPLWHPCSSLRQHILPSPDGPAPRHTGLREPRLGQEEASAQPRNFSHNSLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GARPQDPSEEGPGDFGFLHASSSIESEAKPAQPQPTGEKEQDKSKTLSLEEAVTSIQQLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GARPQDPSEEGPGDFGFLHASSSIESEAKPAQPQPTGEKEQDKSKTLSLEEAVTSIQQLF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD QLSVSIAFNFLGTENMKSGDHTAAFSYFQKAAARGYSKAQYNAGLCHEHGRGTPRDISKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QLSVSIAFNFLGTENMKSGDHTAAFSYFQKAAARGYSKAQYNAGLCHEHGRGTPRDISKA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VLYYQLAASQGHSLAQYRYARCLLRDPASSWNPERQRAVSLLKQAADSGLREAQAFLGVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VLYYQLAASQGHSLAQYRYARCLLRDPASSWNPERQRAVSLLKQAADSGLREAQAFLGVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD FTKEPYLDEQRAVKYLWLAANNGDSQSRYHLGICYEKGLGVQRNLGEALRCYQQSAALGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FTKEPYLDEQRAVKYLWLAANNGDSQSRYHLGICYEKGLGVQRNLGEALRCYQQSAALGN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD EAAQERLRALFSMGAAAPGPSDLTVTGLKSFSSPSLCSLNTLLAGTSRLPHASSTGNLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EAAQERLRALFSMGAAAPGPSDLTVTGLKSFSSPSLCSLNTLLAGTSRLPHASSTGNLGL
              430       440       450       460       470       480

              490       500       510     
pF1KSD LCRSGHLGASLEASSRAIPPHPYPLERSVVRLGFG
       :::::::::::::::::::::::::::::::::::
CCDS42 LCRSGHLGASLEASSRAIPPHPYPLERSVVRLGFG
              490       500       510     




515 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:13:02 2016 done: Thu Nov  3 00:13:02 2016
 Total Scan time:  2.960 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]