Result of FASTA (omim) for
pF1KSDA0140
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0140, 422 aa
1>>>pF1KSDA0140 422 - 422 aa - 422 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0721+/-0.000294; mu= 10.2957+/- 0.018
mean_var=122.0027+/-24.544, 0's: 0 Z-trim(121.9): 10 B-trim: 635 in 1/53
Lambda= 0.116115
statistics sampled from 39131 (39143) to 39131 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.459), width: 16
Scan time: 8.260
The best scores are: opt bits E(85289)
NP_057689 (OMIM: 609372) protein FAM53C [Homo sapi ( 392) 432 82.9 1.6e-15
NP_001129119 (OMIM: 609372) protein FAM53C [Homo s ( 392) 432 82.9 1.6e-15
>>NP_057689 (OMIM: 609372) protein FAM53C [Homo sapiens] (392 aa)
initn: 391 init1: 179 opt: 432 Z-score: 399.6 bits: 82.9 E(85289): 1.6e-15
Smith-Waterman score: 443; 30.4% identity (50.4% similar) in 450 aa overlap (1-422:1-392)
10 20 30 40 50
pF1KSD MVMVLSESLSTRGADSIACGTFSRELHTPKKMSQGPTLFSCG-----IMENDRWRDLDR-
:. ...:.:. . : . : :: : : . . . .:: . :. :: : .
NP_057 MITLITEQLQKQTLDELKCTRFSISLPLPDHAD----ISNCGNSFQLVSEGASWRGLPHC
10 20 30 40 50
60 70 80 90 100
pF1KSD KCPLQID------QPS-TSIWECLPEKDSSLWHREAVTACAVTSLIKDLSISDHNGNPSA
.: : .:: :. : . .: .: . .. : .. : :
NP_057 SCAEFQDSLNFSYHPSGLSLHLRPPSRGNS--PKEQPFSQVLRPEPPD---PEKLPVPPA
60 70 80 90 100 110
110 120 130 140 150 160
pF1KSD PPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYSNGFSTMQRSSS
:::::.::::: ..: . ::: ::.:::...: .::. : . : .: ::
NP_057 PPSKRHCRSLSVPVDLSRWQPVWRPAPSKLWTPIKHRGSGGGGGPQVPHQ--SPPKRVSS
120 130 140 150 160
170 180 190 200 210
pF1KSD FSLPSRANVLSSPCDQAGLHHRFGGQPCQGVP----GSAPCG---QAGDTWSPD---LHP
. . .: :: : : :: . : .. .: ::. :.: .: : : :
NP_057 LRF-LQAPSASSQCAPA---HRPYSPPFFSLALAQDSSRPCAASPQSG-SWESDAESLSP
170 180 190 200 210 220
220 230 240 250 260 270
pF1KSD VGGGR-LDLQRSLSCSHEQFSFVEYCPPSANSTPASTPELARRSSGLS---RSRSQPCVL
: ..:. ::. . .: ::: :.:::.::: : :: ::::::: :
NP_057 CPPQRRFSLSPSLGPQASRFL------PSARSSPASSPELPWRPRGLRNLPRSRSQPCDL
230 240 250 260 270
280 290 300 310 320 330
pF1KSD NDKKVGVKRRRPEEVQEQRPSLDLAKMAQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNT
. .:.:::::. :. .. :::::. :: : . .:. ::. ... . ::
NP_057 DARKTGVKRRHEEDPRRLRPSLDFDKMNQ--KPYSGGLCLQETAREGSSISP--------
280 290 300 310 320
340 350 360 370 380 390
pF1KSD RAWTALLSASGPGGRTPAGTPVPEPLPPSFDDHLVCQEDLSCEESDSCALDEDCGRRAEP
: ... : : :: : :. . . : . .:. :
NP_057 -PW--FMACS------------PPPLSAS------CSPTGGSSQVLSESEEEEEG-----
330 340 350 360
400 410 420
pF1KSD AAAWRDRGAPGNSLCSLD-GELDIEQIEKN
:. : .. .::. : :.::.. ::.:
NP_057 AVRWGRQALSKRTLCQRDFGDLDLNLIEEN
370 380 390
>>NP_001129119 (OMIM: 609372) protein FAM53C [Homo sapie (392 aa)
initn: 391 init1: 179 opt: 432 Z-score: 399.6 bits: 82.9 E(85289): 1.6e-15
Smith-Waterman score: 443; 30.4% identity (50.4% similar) in 450 aa overlap (1-422:1-392)
10 20 30 40 50
pF1KSD MVMVLSESLSTRGADSIACGTFSRELHTPKKMSQGPTLFSCG-----IMENDRWRDLDR-
:. ...:.:. . : . : :: : : . . . .:: . :. :: : .
NP_001 MITLITEQLQKQTLDELKCTRFSISLPLPDHAD----ISNCGNSFQLVSEGASWRGLPHC
10 20 30 40 50
60 70 80 90 100
pF1KSD KCPLQID------QPS-TSIWECLPEKDSSLWHREAVTACAVTSLIKDLSISDHNGNPSA
.: : .:: :. : . .: .: . .. : .. : :
NP_001 SCAEFQDSLNFSYHPSGLSLHLRPPSRGNS--PKEQPFSQVLRPEPPD---PEKLPVPPA
60 70 80 90 100 110
110 120 130 140 150 160
pF1KSD PPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYSNGFSTMQRSSS
:::::.::::: ..: . ::: ::.:::...: .::. : . : .: ::
NP_001 PPSKRHCRSLSVPVDLSRWQPVWRPAPSKLWTPIKHRGSGGGGGPQVPHQ--SPPKRVSS
120 130 140 150 160
170 180 190 200 210
pF1KSD FSLPSRANVLSSPCDQAGLHHRFGGQPCQGVP----GSAPCG---QAGDTWSPD---LHP
. . .: :: : : :: . : .. .: ::. :.: .: : : :
NP_001 LRF-LQAPSASSQCAPA---HRPYSPPFFSLALAQDSSRPCAASPQSG-SWESDAESLSP
170 180 190 200 210 220
220 230 240 250 260 270
pF1KSD VGGGR-LDLQRSLSCSHEQFSFVEYCPPSANSTPASTPELARRSSGLS---RSRSQPCVL
: ..:. ::. . .: ::: :.:::.::: : :: ::::::: :
NP_001 CPPQRRFSLSPSLGPQASRFL------PSARSSPASSPELPWRPRGLRNLPRSRSQPCDL
230 240 250 260 270
280 290 300 310 320 330
pF1KSD NDKKVGVKRRRPEEVQEQRPSLDLAKMAQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNT
. .:.:::::. :. .. :::::. :: : . .:. ::. ... . ::
NP_001 DARKTGVKRRHEEDPRRLRPSLDFDKMNQ--KPYSGGLCLQETAREGSSISP--------
280 290 300 310 320
340 350 360 370 380 390
pF1KSD RAWTALLSASGPGGRTPAGTPVPEPLPPSFDDHLVCQEDLSCEESDSCALDEDCGRRAEP
: ... : : :: : :. . . : . .:. :
NP_001 -PW--FMACS------------PPPLSAS------CSPTGGSSQVLSESEEEEEG-----
330 340 350 360
400 410 420
pF1KSD AAAWRDRGAPGNSLCSLD-GELDIEQIEKN
:. : .. .::. : :.::.. ::.:
NP_001 AVRWGRQALSKRTLCQRDFGDLDLNLIEEN
370 380 390
422 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:12:24 2016 done: Thu Nov 3 00:12:25 2016
Total Scan time: 8.260 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]