Result of FASTA (ccds) for
pF1KSDA0139
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0139, 1382 aa
1>>>pF1KSDA0139 1382 - 1382 aa - 1382 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.9125+/-0.00155; mu= -15.6411+/- 0.091
mean_var=605.2452+/-127.942, 0's: 0 Z-trim(110.8): 127 B-trim: 197 in 1/52
Lambda= 0.052133
statistics sampled from 11832 (11921) to 11832 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.366), width: 16
Scan time: 5.200
The best scores are: opt bits E(32554)
CCDS7608.1 EIF3A gene_id:8661|Hs108|chr10 (1382) 9408 724.3 5.5e-208
>>CCDS7608.1 EIF3A gene_id:8661|Hs108|chr10 (1382 aa)
initn: 9408 init1: 9408 opt: 9408 Z-score: 3847.4 bits: 724.3 E(32554): 5.5e-208
Smith-Waterman score: 9408; 100.0% identity (100.0% similar) in 1382 aa overlap (1-1382:1-1382)
10 20 30 40 50 60
pF1KSD MPAYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MPAYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LRKSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKMAEEKTEAAKEESQQMVLDIEDLDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LRKSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKMAEEKTEAAKEESQQMVLDIEDLDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD IQTPESVLLSAVSGEDTQDRTDRLLLTPWVKFLWESYRQCLDLLRNNSRVERLYHDIAQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 IQTPESVLLSAVSGEDTQDRTDRLLLTPWVKFLWESYRQCLDLLRNNSRVERLYHDIAQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD AFKFCLQYTRKAEFRKLCDNLRMHLSQIQRHHNQSTAINLNNPESQSMHLETRLVQLDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AFKFCLQYTRKAEFRKLCDNLRMHLSQIQRHHNQSTAINLNNPESQSMHLETRLVQLDSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ISMELWQEAFKAVEDIHGLFSLSKKPPKPQLMANYYNKVSTVFWKSGNALFHASTLHRLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ISMELWQEAFKAVEDIHGLFSLSKKPPKPQLMANYYNKVSTVFWKSGNALFHASTLHRLY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD HLSREMRKNLTQDEMQRMSTRVLLATLSIPITPERTDIARLLDMDGIIVEKQRRLATLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HLSREMRKNLTQDEMQRMSTRVLLATLSIPITPERTDIARLLDMDGIIVEKQRRLATLLG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LQAPPTRIGLINDMVRFNVLQYVVPEVKDLYNWLEVEFNPLKLCERVTKVLNWVREQPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LQAPPTRIGLINDMVRFNVLQYVVPEVKDLYNWLEVEFNPLKLCERVTKVLNWVREQPEK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD EPELQQYVPQLQNNTILRLLQQVSQIYQSIEFSRLTSLVPFVDAFQLERAIVDAARHCDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EPELQQYVPQLQNNTILRLLQQVSQIYQSIEFSRLTSLVPFVDAFQLERAIVDAARHCDL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QVRIDHTSRTLSFGSDLNYATREDAPIGPHLQSMPSEQIRNQLTAMSSVLAKALEVIKPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QVRIDHTSRTLSFGSDLNYATREDAPIGPHLQSMPSEQIRNQLTAMSSVLAKALEVIKPA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD HILQEKEEQHQLAVTAYLKNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HILQEKEEQHQLAVTAYLKNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIED
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD LEELDPDFIMAKQVEQLEKEKKELQERLKNQEKKIDYFERAKRLEEIPLIKSAYEEQRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LEELDPDFIMAKQVEQLEKEKKELQERLKNQEKKIDYFERAKRLEEIPLIKSAYEEQRIK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD DMDLWEQQEEERITTMQLEREKALEHKNRMSRMLEDRDLFVMRLKAARQSVYEEKLKQFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DMDLWEQQEEERITTMQLEREKALEHKNRMSRMLEDRDLFVMRLKAARQSVYEEKLKQFE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ERLAEERHNRLEERKRQRKEERRITYYREKEEEEQRRAEEQMLKEREERERAERAKREEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ERLAEERHNRLEERKRQRKEERRITYYREKEEEEQRRAEEQMLKEREERERAERAKREEE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD LREYQERVKKLEEVERKKRQRELEIEERERRREEERRLGDSSLSRKDSRWGDRDSEGTWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LREYQERVKKLEEVERKKRQRELEIEERERRREEERRLGDSSLSRKDSRWGDRDSEGTWR
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD KGPEADSEWRRGPPEKEWRRGEGRDEDRSHRRDEERPRRLGDDEDREPSLRPDDDRVPRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KGPEADSEWRRGPPEKEWRRGEGRDEDRSHRRDEERPRRLGDDEDREPSLRPDDDRVPRR
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD GMDDDRGPRRGPEEDRFSRRGADDDRPSWRNTDDDRPPRRIADEDRGNWRHADDDRPPRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GMDDDRGPRRGPEEDRFSRRGADDDRPSWRNTDDDRPPRRIADEDRGNWRHADDDRPPRR
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD GLDEDRGSWRTADEDRGPRRGMDDDRGPRRGGADDERSSWRNADDDRGPRRGLDDDRGPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GLDEDRGSWRTADEDRGPRRGMDDDRGPRRGGADDERSSWRNADDDRGPRRGLDDDRGPR
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD RGMDDDRGPRRGMDDDRGPRRGMDDDRGPRRGLDDDRGPWRNADDDRIPRRGAEDDRGPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RGMDDDRGPRRGMDDDRGPRRGMDDDRGPRRGLDDDRGPWRNADDDRIPRRGAEDDRGPW
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD RNMDDDRLSRRADDDRFPRRGDDSRPGPWRPLVKPGGWREKEKAREESWGPPRESRPSEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RNMDDDRLSRRADDDRFPRRGDDSRPGPWRPLVKPGGWREKEKAREESWGPPRESRPSEE
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD REWDREKERDRDNQDREENDKDPERERDRERDVDREDRFRRPRDEGGWRRGPAEESSSWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 REWDREKERDRDNQDREENDKDPERERDRERDVDREDRFRRPRDEGGWRRGPAEESSSWR
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD DSSRRDDRDRDDRRRERDDRRDLRERRDLRDDRDRRGPPLRSEREEVSSWRRADDRKDDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DSSRRDDRDRDDRRRERDDRRDLRERRDLRDDRDRRGPPLRSEREEVSSWRRADDRKDDR
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KSD VEERDPPRRVPPPALSRDRERDRDREREGEKEKASWRAEKDRESLRRTKNETDEDGWTTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VEERDPPRRVPPPALSRDRERDRDREREGEKEKASWRAEKDRESLRRTKNETDEDGWTTV
1330 1340 1350 1360 1370 1380
pF1KSD RR
::
CCDS76 RR
1382 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:11:47 2016 done: Thu Nov 3 00:11:48 2016
Total Scan time: 5.200 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]