FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0127, 314 aa
  1>>>pF1KSDA0127 314 - 314 aa - 314 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2365+/-0.000818; mu= 2.7103+/- 0.049
 mean_var=148.5879+/-29.345, 0's: 0 Z-trim(112.8): 10  B-trim: 4 in 1/51
 Lambda= 0.105216
 statistics sampled from 13543 (13547) to 13543 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.416), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS33210.1 SERTAD2 gene_id:9792|Hs108|chr2        ( 314) 2064 324.4 7.2e-89


>>CCDS33210.1 SERTAD2 gene_id:9792|Hs108|chr2             (314 aa)
 initn: 2064 init1: 2064 opt: 2064  Z-score: 1709.0  bits: 324.4 E(32554): 7.2e-89
Smith-Waterman score: 2064; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KSD MLGKGGKRKFDEHEDGLEGKIVSPCDGPSKVSYTLQRQTIFNISLMKLYNHRPLTEPSLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLGKGGKRKFDEHEDGLEGKIVSPCDGPSKVSYTLQRQTIFNISLMKLYNHRPLTEPSLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KTVLINNMLRRIQEELKQEGSLRPMFTPSSQPTTEPSDSYREAPPAFSHLASPSSHPCDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KTVLINNMLRRIQEELKQEGSLRPMFTPSSQPTTEPSDSYREAPPAFSHLASPSSHPCDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GSTTPLEACLTPASLLEDDDDTFCTSQAMQPTAPTKLSPPALLPEKDSFSSALDEIEELC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GSTTPLEACLTPASLLEDDDDTFCTSQAMQPTAPTKLSPPALLPEKDSFSSALDEIEELC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD PTSTSTEAATAATDSVKGTSSEAGTQKLDGPQESRADDSKLMDSLPGNFEITTSTGFLTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PTSTSTEAATAATDSVKGTSSEAGTQKLDGPQESRADDSKLMDSLPGNFEITTSTGFLTD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LTLDDILFADIDTSMYDFDPCTSSSGTASKMAPVSADDLLKTLAPYSSQPVTPSQPFKMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LTLDDILFADIDTSMYDFDPCTSSSGTASKMAPVSADDLLKTLAPYSSQPVTPSQPFKMD
              250       260       270       280       290       300

              310    
pF1KSD LTELDHIMEVLVGS
       ::::::::::::::
CCDS33 LTELDHIMEVLVGS
              310    




314 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:08:24 2016 done: Thu Nov  3 00:08:24 2016
 Total Scan time:  2.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]