FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0112, 365 aa
  1>>>pF1KSDA0112 365 - 365 aa - 365 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0643+/-0.000825; mu= 11.8958+/- 0.050
 mean_var=177.2986+/-35.225, 0's: 0 Z-trim(114.0): 9  B-trim: 0 in 0/51
 Lambda= 0.096321
 statistics sampled from 14624 (14630) to 14624 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.449), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS6189.1 RRS1 gene_id:23212|Hs108|chr8           ( 365) 2466 354.2   1e-97


>>CCDS6189.1 RRS1 gene_id:23212|Hs108|chr8                (365 aa)
 initn: 2466 init1: 2466 opt: 2466  Z-score: 1868.0  bits: 354.2 E(32554): 1e-97
Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)

               10        20        30        40        50        60
pF1KSD MEGQSVEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MEGQSVEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 KGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD RVAKNELNRLRNLARAHKMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RVAKNELNRLRNLARAHKMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KEKVPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 KEKVPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 AKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG
              310       320       330       340       350       360

            
pF1KSD GKRRK
       :::::
CCDS61 GKRRK
            




365 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:26:40 2016 done: Thu Nov  3 18:26:40 2016
 Total Scan time:  3.090 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]