FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0106, 224 aa
  1>>>pF1KSDA0106 224 - 224 aa - 224 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3231+/-0.000772; mu= 13.1656+/- 0.046
 mean_var=55.1176+/-11.252, 0's: 0 Z-trim(106.9): 15  B-trim: 373 in 1/50
 Lambda= 0.172754
 statistics sampled from 9229 (9240) to 9229 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.284), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS1307.1 PRDX6 gene_id:9588|Hs108|chr1           ( 224) 1498 381.2  3e-106


>>CCDS1307.1 PRDX6 gene_id:9588|Hs108|chr1                (224 aa)
 initn: 1498 init1: 1498 opt: 1498  Z-score: 2021.0  bits: 381.2 E(32554): 3e-106
Smith-Waterman score: 1498; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KSD MPGGLLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPGGLLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FAKRNVKLIALSIDSVEDHLAWSKDINAYNCEEPTEKLPFPIIDDRNRELAILLGMLDPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FAKRNVKLIALSIDSVEDHLAWSKDINAYNCEEPTEKLPFPIIDDRNRELAILLGMLDPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVD
              130       140       150       160       170       180

              190       200       210       220    
pF1KSD WKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP
              190       200       210       220    




224 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:00:06 2016 done: Thu Nov  3 00:00:06 2016
 Total Scan time:  2.040 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]