Result of FASTA (omim) for
pF1KSDA0091
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0091, 1052 aa
1>>>pF1KSDA0091 1052 - 1052 aa - 1052 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5810+/-0.0004; mu= 15.0468+/- 0.025
mean_var=90.1353+/-18.392, 0's: 0 Z-trim(113.8): 14 B-trim: 1183 in 1/48
Lambda= 0.135091
statistics sampled from 23357 (23369) to 23357 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.274), width: 16
Scan time: 11.000
The best scores are: opt bits E(85289)
NP_003782 (OMIM: 603355) membrane-bound transcript (1052) 7205 1415.1 0
XP_016879305 (OMIM: 603355) PREDICTED: membrane-bo ( 611) 4243 837.8 0
XP_016879306 (OMIM: 603355) PREDICTED: membrane-bo ( 556) 3878 766.6 0
>>NP_003782 (OMIM: 603355) membrane-bound transcription (1052 aa)
initn: 7205 init1: 7205 opt: 7205 Z-score: 7585.0 bits: 1415.1 E(85289): 0
Smith-Waterman score: 7205; 100.0% identity (100.0% similar) in 1052 aa overlap (1-1052:1-1052)
10 20 30 40 50 60
pF1KSD MKLVNIWLLLLVVLLCGKKHLGDRLEKKSFEKAPCPGCSHLTLKVEFSSTVVEYEYIVAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MKLVNIWLLLLVVLLCGKKHLGDRLEKKSFEKAPCPGCSHLTLKVEFSSTVVEYEYIVAF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NGYFTAKARNSFISSALKSSEVDNWRIIPRNNPSSDYPSDFEVIQIKEKQKAGLLTLEDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NGYFTAKARNSFISSALKSSEVDNWRIIPRNNPSSDYPSDFEVIQIKEKQKAGLLTLEDH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PNIKRVTPQRKVFRSLKYAESDPTVPCNETRWSQKWQSSRPLRRASLSLGSGFWHATGRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PNIKRVTPQRKVFRSLKYAESDPTVPCNETRWSQKWQSSRPLRRASLSLGSGFWHATGRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SSRRLLRAIPRQVAQTLQADVLWQMGYTGANVRVAVFDTGLSEKHPHFKNVKERTNWTNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SSRRLLRAIPRQVAQTLQADVLWQMGYTGANVRVAVFDTGLSEKHPHFKNVKERTNWTNE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RTLDDGLGHGTFVAGVIASMRECQGFAPDAELHIFRVFTNNQVSYTSWFLDAFNYAILKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RTLDDGLGHGTFVAGVIASMRECQGFAPDAELHIFRVFTNNQVSYTSWFLDAFNYAILKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IDVLNLSIGGPDFMDHPFVDKVWELTANNVIMVSAIGNDGPLYGTLNNPADQMDVIGVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IDVLNLSIGGPDFMDHPFVDKVWELTANNVIMVSAIGNDGPLYGTLNNPADQMDVIGVGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD IDFEDNIARFSSRGMTTWELPGGYGRMKPDIVTYGAGVRGSGVKGGCRALSGTSVASPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IDFEDNIARFSSRGMTTWELPGGYGRMKPDIVTYGAGVRGSGVKGGCRALSGTSVASPVV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD AGAVTLLVSTVQKRELVNPASMKQALIASARRLPGVNMFEQGHGKLDLLRAYQILNSYKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AGAVTLLVSTVQKRELVNPASMKQALIASARRLPGVNMFEQGHGKLDLLRAYQILNSYKP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTGRIVDKPDWQPYLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTGRIVDKPDWQPYLPQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD NGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMITVASPAETESKNGAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMITVASPAETESKNGAE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD QTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMKNDPLDWNGDHIHTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMKNDPLDWNGDHIHTN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD FRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEEIAKLRRDVDNGLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEEIAKLRRDVDNGLSL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD VIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWNMGFSDGLYEGEFTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWNMGFSDGLYEGEFTL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVPILGLYQIPAEGGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVPILGLYQIPAEGGGR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD IVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPPSGAGSVTPERM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPPSGAGSVTPERM
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD EGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQKLLSIDLDKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQKLLSIDLDKV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD VLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFAFLGAMVVLAFFVVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFAFLGAMVVLAFFVVQ
970 980 990 1000 1010 1020
1030 1040 1050
pF1KSD INKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
::::::::::::::::::::::::::::::::
NP_003 INKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
1030 1040 1050
>>XP_016879305 (OMIM: 603355) PREDICTED: membrane-bound (611 aa)
initn: 4243 init1: 4243 opt: 4243 Z-score: 4468.9 bits: 837.8 E(85289): 0
Smith-Waterman score: 4243; 100.0% identity (100.0% similar) in 611 aa overlap (442-1052:1-611)
420 430 440 450 460 470
pF1KSD GTSVASPVVAGAVTLLVSTVQKRELVNPASMKQALIASARRLPGVNMFEQGHGKLDLLRA
::::::::::::::::::::::::::::::
XP_016 MKQALIASARRLPGVNMFEQGHGKLDLLRA
10 20 30
480 490 500 510 520 530
pF1KSD YQILNSYKPQASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTGRIVDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YQILNSYKPQASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTGRIVDK
40 50 60 70 80 90
540 550 560 570 580 590
pF1KSD PDWQPYLPQNGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMITVASPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDWQPYLPQNGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMITVASPA
100 110 120 130 140 150
600 610 620 630 640 650
pF1KSD ETESKNGAEQTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMKNDPLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETESKNGAEQTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMKNDPLD
160 170 180 190 200 210
660 670 680 690 700 710
pF1KSD WNGDHIHTNFRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEEIAKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WNGDHIHTNFRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEEIAKLR
220 230 240 250 260 270
720 730 740 750 760 770
pF1KSD RDVDNGLSLVIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWNMGFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDVDNGLSLVIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWNMGFSD
280 290 300 310 320 330
780 790 800 810 820 830
pF1KSD GLYEGEFTLANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVPILGLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLYEGEFTLANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVPILGLY
340 350 360 370 380 390
840 850 860 870 880 890
pF1KSD QIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPPSG
400 410 420 430 440 450
900 910 920 930 940 950
pF1KSD AGSVTPERMEGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGSVTPERMEGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQK
460 470 480 490 500 510
960 970 980 990 1000 1010
pF1KSD LLSIDLDKVVLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFAFLGAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLSIDLDKVVLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFAFLGAM
520 530 540 550 560 570
1020 1030 1040 1050
pF1KSD VVLAFFVVQINKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
:::::::::::::::::::::::::::::::::::::::::
XP_016 VVLAFFVVQINKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
580 590 600 610
>>XP_016879306 (OMIM: 603355) PREDICTED: membrane-bound (556 aa)
initn: 3878 init1: 3878 opt: 3878 Z-score: 4085.1 bits: 766.6 E(85289): 0
Smith-Waterman score: 3878; 100.0% identity (100.0% similar) in 556 aa overlap (497-1052:1-556)
470 480 490 500 510 520
pF1KSD DLLRAYQILNSYKPQASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTG
::::::::::::::::::::::::::::::
XP_016 MWPYCSQPIYYGGMPTVVNVTILNGMGVTG
10 20 30
530 540 550 560 570 580
pF1KSD RIVDKPDWQPYLPQNGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIVDKPDWQPYLPQNGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMIT
40 50 60 70 80 90
590 600 610 620 630 640
pF1KSD VASPAETESKNGAEQTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VASPAETESKNGAEQTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMK
100 110 120 130 140 150
650 660 670 680 690 700
pF1KSD NDPLDWNGDHIHTNFRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDPLDWNGDHIHTNFRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEE
160 170 180 190 200 210
710 720 730 740 750 760
pF1KSD IAKLRRDVDNGLSLVIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAKLRRDVDNGLSLVIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWN
220 230 240 250 260 270
770 780 790 800 810 820
pF1KSD MGFSDGLYEGEFTLANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFSDGLYEGEFTLANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVP
280 290 300 310 320 330
830 840 850 860 870 880
pF1KSD ILGLYQIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILGLYQIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQ
340 350 360 370 380 390
890 900 910 920 930 940
pF1KSD RPPSGAGSVTPERMEGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPPSGAGSVTPERMEGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNL
400 410 420 430 440 450
950 960 970 980 990 1000
pF1KSD WKHQKLLSIDLDKVVLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WKHQKLLSIDLDKVVLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFA
460 470 480 490 500 510
1010 1020 1030 1040 1050
pF1KSD FLGAMVVLAFFVVQINKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLGAMVVLAFFVVQINKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
520 530 540 550
1052 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:55:30 2016 done: Wed Nov 2 23:55:31 2016
Total Scan time: 11.000 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]