FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0091, 1052 aa
  1>>>pF1KSDA0091 1052 - 1052 aa - 1052 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3055+/-0.000932; mu= 16.6915+/- 0.056
 mean_var=85.0956+/-16.813, 0's: 0 Z-trim(107.0): 23  B-trim: 2 in 1/48
 Lambda= 0.139034
 statistics sampled from 9276 (9285) to 9276 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.285), width:  16
 Scan time:  4.630

The best scores are:                                      opt bits E(32554)
CCDS10941.1 MBTPS1 gene_id:8720|Hs108|chr16        (1052) 7205 1455.8       0


>>CCDS10941.1 MBTPS1 gene_id:8720|Hs108|chr16             (1052 aa)
 initn: 7205 init1: 7205 opt: 7205  Z-score: 7804.7  bits: 1455.8 E(32554):    0
Smith-Waterman score: 7205; 100.0% identity (100.0% similar) in 1052 aa overlap (1-1052:1-1052)

               10        20        30        40        50        60
pF1KSD MKLVNIWLLLLVVLLCGKKHLGDRLEKKSFEKAPCPGCSHLTLKVEFSSTVVEYEYIVAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MKLVNIWLLLLVVLLCGKKHLGDRLEKKSFEKAPCPGCSHLTLKVEFSSTVVEYEYIVAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NGYFTAKARNSFISSALKSSEVDNWRIIPRNNPSSDYPSDFEVIQIKEKQKAGLLTLEDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NGYFTAKARNSFISSALKSSEVDNWRIIPRNNPSSDYPSDFEVIQIKEKQKAGLLTLEDH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PNIKRVTPQRKVFRSLKYAESDPTVPCNETRWSQKWQSSRPLRRASLSLGSGFWHATGRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PNIKRVTPQRKVFRSLKYAESDPTVPCNETRWSQKWQSSRPLRRASLSLGSGFWHATGRH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SSRRLLRAIPRQVAQTLQADVLWQMGYTGANVRVAVFDTGLSEKHPHFKNVKERTNWTNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSRRLLRAIPRQVAQTLQADVLWQMGYTGANVRVAVFDTGLSEKHPHFKNVKERTNWTNE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RTLDDGLGHGTFVAGVIASMRECQGFAPDAELHIFRVFTNNQVSYTSWFLDAFNYAILKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RTLDDGLGHGTFVAGVIASMRECQGFAPDAELHIFRVFTNNQVSYTSWFLDAFNYAILKK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IDVLNLSIGGPDFMDHPFVDKVWELTANNVIMVSAIGNDGPLYGTLNNPADQMDVIGVGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IDVLNLSIGGPDFMDHPFVDKVWELTANNVIMVSAIGNDGPLYGTLNNPADQMDVIGVGG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IDFEDNIARFSSRGMTTWELPGGYGRMKPDIVTYGAGVRGSGVKGGCRALSGTSVASPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IDFEDNIARFSSRGMTTWELPGGYGRMKPDIVTYGAGVRGSGVKGGCRALSGTSVASPVV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AGAVTLLVSTVQKRELVNPASMKQALIASARRLPGVNMFEQGHGKLDLLRAYQILNSYKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AGAVTLLVSTVQKRELVNPASMKQALIASARRLPGVNMFEQGHGKLDLLRAYQILNSYKP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD QASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTGRIVDKPDWQPYLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTGRIVDKPDWQPYLPQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD NGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMITVASPAETESKNGAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMITVASPAETESKNGAE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD QTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMKNDPLDWNGDHIHTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMKNDPLDWNGDHIHTN
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD FRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEEIAKLRRDVDNGLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEEIAKLRRDVDNGLSL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD VIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWNMGFSDGLYEGEFTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWNMGFSDGLYEGEFTL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVPILGLYQIPAEGGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVPILGLYQIPAEGGGR
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD IVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPPSGAGSVTPERM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPPSGAGSVTPERM
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD EGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQKLLSIDLDKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQKLLSIDLDKV
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD VLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFAFLGAMVVLAFFVVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFAFLGAMVVLAFFVVQ
              970       980       990      1000      1010      1020

             1030      1040      1050  
pF1KSD INKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
       ::::::::::::::::::::::::::::::::
CCDS10 INKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
             1030      1040      1050  




1052 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:55:29 2016 done: Wed Nov  2 23:55:29 2016
 Total Scan time:  4.630 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]