FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0081, 234 aa
  1>>>pF1KSDA0081 234 - 234 aa - 234 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4647+/-0.000241; mu= 10.6330+/- 0.015
 mean_var=104.3914+/-20.494, 0's: 0 Z-trim(123.7): 1  B-trim: 77 in 1/58
 Lambda= 0.125528
 statistics sampled from 43865 (43866) to 43865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.514), width:  16
 Scan time:  7.440

The best scores are:                                      opt bits E(85289)
NP_055969 (OMIM: 607783) LDLR chaperone MESD precu ( 234) 1570 293.5   2e-79


>>NP_055969 (OMIM: 607783) LDLR chaperone MESD precursor  (234 aa)
 initn: 1570 init1: 1570 opt: 1570  Z-score: 1546.9  bits: 293.5 E(85289): 2e-79
Smith-Waterman score: 1570; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KSD MAASRWARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPPRKKKKDIRDYND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAASRWARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPPRKKKKDIRDYND
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ADMARLLEQWEKDDDIEEGDLPEHKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ADMARLLEQWEKDDDIEEGDLPEHKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRC
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KSD ADVTLEGQVYPGKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKREDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ADVTLEGQVYPGKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKREDL
              190       200       210       220       230    




234 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:50:51 2016 done: Wed Nov  2 23:50:52 2016
 Total Scan time:  7.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]