FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0069, 203 aa
  1>>>pF1KSDA0069 203 - 203 aa - 203 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7370+/-0.000377; mu= 15.7391+/- 0.023
 mean_var=56.8447+/-11.211, 0's: 0 Z-trim(112.6): 9  B-trim: 76 in 1/49
 Lambda= 0.170110
 statistics sampled from 21514 (21520) to 21514 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.252), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(85289)
NP_055976 (OMIM: 607669,615685) ADP-ribosylation f ( 203) 1345 338.2 5.5e-93
NP_001300787 (OMIM: 607669,615685) ADP-ribosylatio ( 174) 1161 293.0 1.9e-79


>>NP_055976 (OMIM: 607669,615685) ADP-ribosylation facto  (203 aa)
 initn: 1345 init1: 1345 opt: 1345  Z-score: 1790.4  bits: 338.2 E(85289): 5.5e-93
Smith-Waterman score: 1345; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KSD MAEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII
              130       140       150       160       170       180

              190       200   
pF1KSD LKYIGMAKREINKLLKQKEKKNE
       :::::::::::::::::::::::
NP_055 LKYIGMAKREINKLLKQKEKKNE
              190       200   

>>NP_001300787 (OMIM: 607669,615685) ADP-ribosylation fa  (174 aa)
 initn: 1161 init1: 1161 opt: 1161  Z-score: 1547.3  bits: 293.0 E(85289): 1.9e-79
Smith-Waterman score: 1161; 100.0% identity (100.0% similar) in 174 aa overlap (30-203:1-174)

               10        20        30        40        50        60
pF1KSD MAEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIY
                                    :::::::::::::::::::::::::::::::
NP_001                              MLMADKVLRWERAWFPPAIMGVVSLVFLIIY
                                            10        20        30 

               70        80        90       100       110       120
pF1KSD YLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAV
              40        50        60        70        80        90 

              130       140       150       160       170       180
pF1KSD GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII
             100       110       120       130       140       150 

              190       200   
pF1KSD LKYIGMAKREINKLLKQKEKKNE
       :::::::::::::::::::::::
NP_001 LKYIGMAKREINKLLKQKEKKNE
             160       170    




203 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:47:13 2016 done: Wed Nov  2 23:47:13 2016
 Total Scan time:  3.520 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]